Strain Fitness in Pseudomonas putida KT2440 around PP_3054

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,434,179	+		PP_3051	0.55	-1.3
3,434,196	+		PP_3051	0.58	+0.9
3,434,197	-		PP_3051	0.58	-3.4
3,434,200	+		PP_3051	0.58	+0.5
3,434,201	-		PP_3051	0.58	+0.1
3,434,201	-		PP_3051	0.58	+3.2
3,434,382	-		PP_3051	0.88	+0.9
3,434,494	-				+0.6
3,434,617	+		PP_3052	0.46	-2.4
3,434,799	-		PP_3053	0.10	+0.9
3,434,799	-				+1.9
3,435,152	+				-0.1
3,435,152	+				-1.1
3,435,494	+		PP_3054	0.41	-0.5
3,435,494	+		PP_3054	0.41	+0.5
3,435,500	+		PP_3054	0.42	-0.8
3,435,500	+		PP_3054	0.42	-1.7
3,435,501	-		PP_3054	0.42	+1.5
3,435,586	-		PP_3054	0.51	+2.5
3,435,586	-				+0.1
3,435,629	+		PP_3054	0.55	+1.3
3,435,756	+		PP_3054	0.68	+1.6
3,435,756	+		PP_3054	0.68	+3.4
3,435,942	-		PP_3054	0.87	-3.1
3,435,942	-		PP_3054	0.87	+1.9
3,435,942	-		PP_3054	0.87	+3.2
3,435,952	-		PP_3054	0.88	-2.3
3,435,957	+		PP_3054	0.88	-2.1
3,436,022	+				-0.5
3,436,023	-				+2.5
3,436,238	-		PP_3055	0.21	-1.0
3,436,370	+		PP_3055	0.37	+0.9
3,436,510	+		PP_3055	0.55	-1.1
3,436,772	-		PP_3055	0.87	-0.5
3,436,875	-				-0.7
3,436,888	+				-2.4
3,436,889	-				-0.2
3,436,990	-		PP_3056	0.13	-0.3
3,437,037	+		PP_3056	0.18	-0.5
3,437,038	-		PP_3056	0.19	-1.1