Strain Fitness in Pseudomonas putida KT2440 around PP_2934

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,335,815	+				-0.9
3,335,880	-		PP_2933	0.15	-1.2
3,335,949	+		PP_2933	0.23	+1.9
3,335,977	+		PP_2933	0.27	+0.8
3,335,978	-		PP_2933	0.27	+3.7
3,335,978	-		PP_2933	0.27	-1.2
3,335,982	+		PP_2933	0.27	-1.5
3,335,982	+		PP_2933	0.27	+1.0
3,335,982	+		PP_2933	0.27	+0.3
3,336,029	+		PP_2933	0.33	-1.2
3,336,030	-		PP_2933	0.33	+0.1
3,336,030	-		PP_2933	0.33	-0.5
3,336,096	+		PP_2933	0.41	+1.8
3,336,096	+				+1.8
3,336,097	-		PP_2933	0.41	-0.5
3,336,097	-		PP_2933	0.41	-1.3
3,336,097	-		PP_2933	0.41	+1.1
3,336,102	+		PP_2933	0.41	+0.8
3,336,102	+		PP_2933	0.41	+2.0
3,336,103	-		PP_2933	0.42	+0.3
3,336,103	-		PP_2933	0.42	+0.9
3,336,129	+		PP_2933	0.45	+0.1
3,336,372	+		PP_2933	0.73	-1.3
3,336,453	+		PP_2933	0.83	+2.2
3,336,454	-		PP_2933	0.83	-2.2
3,336,454	-		PP_2933	0.83	+0.8
3,336,579	+				+0.7
3,336,580	-				-2.6
3,336,580	-				+0.4
3,336,652	+				+0.3
3,336,652	+				+2.2
3,336,652	+				-1.3
3,336,653	-				-2.3
3,336,653	-				+0.1
3,336,756	-				-0.1
3,336,889	+				+2.0
3,336,889	+				+0.7
3,336,890	-				+0.5
3,336,890	-				+0.5
3,336,890	-				-0.8
3,336,973	+		PP_2934	0.17	-0.7
3,336,973	+		PP_2934	0.17	+2.1
3,336,973	+		PP_2934	0.17	+0.3
3,336,973	+		PP_2934	0.17	+0.6
3,336,974	-		PP_2934	0.17	+1.1
3,336,975	+		PP_2934	0.17	-0.9
3,336,976	-		PP_2934	0.17	+2.3
3,337,041	+		PP_2934	0.23	-3.3
3,337,083	-		PP_2934	0.27	+0.8
3,337,083	-		PP_2934	0.27	+1.8
3,337,187	+		PP_2934	0.37	-0.6
3,337,356	-		PP_2934	0.53	+3.8
3,337,356	-		PP_2934	0.53	+2.0
3,337,404	+		PP_2934	0.58	+2.5
3,337,404	+		PP_2934	0.58	+0.5
3,337,404	+		PP_2934	0.58	-0.6
3,337,535	+		PP_2934	0.70	+2.2
3,337,535	+		PP_2934	0.70	+0.0
3,337,536	-		PP_2934	0.71	-0.3
3,337,536	-		PP_2934	0.71	+0.3
3,337,566	+		PP_2934	0.73	-2.4
3,337,574	-		PP_2934	0.74	-1.3
3,337,647	+		PP_2934	0.81	+0.2
3,337,648	-		PP_2934	0.81	-0.9
3,337,727	+		PP_2934	0.89	-0.9
3,337,728	-		PP_2934	0.89	+3.0
3,337,730	-		PP_2934	0.89	-1.0
3,337,904	+				-1.6
3,337,905	-				+1.0
3,337,905	-				+1.1
3,337,965	+		PP_2935	0.13	-2.6
3,337,965	+		PP_2935	0.13	-2.9
3,337,966	-		PP_2935	0.13	+0.5
3,337,966	-		PP_2935	0.13	-0.2
3,338,034	+		PP_2935	0.19	+1.2
3,338,157	+		PP_2935	0.29	-1.3
3,338,158	-		PP_2935	0.30	+1.4
3,338,265	+		PP_2935	0.39	+0.8
3,338,266	-		PP_2935	0.39	-0.4
3,338,266	-		PP_2935	0.39	+0.8
3,338,266	-		PP_2935	0.39	-2.0
3,338,268	+		PP_2935	0.39	+0.8
3,338,268	+		PP_2935	0.39	-0.4
3,338,269	-		PP_2935	0.39	+0.8
3,338,269	-		PP_2935	0.39	-2.5
3,338,520	+		PP_2935	0.60	+3.4
3,338,521	-		PP_2935	0.60	-0.6
3,338,828	+		PP_2935	0.86	-3.0
3,338,829	-		PP_2935	0.86	+0.0