Strain Fitness in Pseudomonas putida KT2440 around PP_2774

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
3,157,066	+		PP_2772	0.67	-1.0
3,157,067	-		PP_2772	0.67	+1.1
3,157,171	+		PP_2772	0.76	-1.0
3,157,536	+		PP_2773	0.14	+0.5
3,157,537	-		PP_2773	0.14	-0.5
3,157,730	-				+0.4
3,157,732	-				-1.8
3,157,732	-				+1.1
3,157,732	-				-0.5
3,157,732	-				+0.8
3,157,993	+				+0.6
3,157,994	-				+1.1
3,157,994	-				+0.8
3,157,998	-				+0.4
3,158,077	+				-0.8
3,158,111	+				-1.8
3,158,198	-		PP_2774	0.10	+2.5
3,158,308	+		PP_2774	0.16	-0.1
3,158,701	-		PP_2774	0.34	+0.5
3,158,717	-		PP_2774	0.35	+2.2
3,158,849	-		PP_2774	0.41	-0.5
3,159,141	+		PP_2774	0.55	-0.0
3,159,156	+		PP_2774	0.56	-0.4
3,159,244	+		PP_2774	0.60	+2.1
3,159,244	+		PP_2774	0.60	+0.7
3,159,407	+		PP_2774	0.68	+0.4
3,159,457	-		PP_2774	0.70	-0.5
3,159,467	+		PP_2774	0.71	-1.2
3,159,468	-		PP_2774	0.71	+1.7
3,159,470	-		PP_2774	0.71	+1.7
3,159,633	+		PP_2774	0.79	+0.8
3,159,938	+				+0.3
3,159,939	-				+0.2
3,160,219	+		PP_2775	0.13	-0.2
3,160,220	-		PP_2775	0.13	-0.6
3,160,267	+		PP_2775	0.17	+0.7
3,160,267	+		PP_2775	0.17	+0.8
3,160,378	+		PP_2775	0.28	-0.2
3,160,378	+		PP_2775	0.28	-2.3
3,160,423	+		PP_2775	0.32	-1.4
3,160,424	-		PP_2775	0.32	+2.4
3,160,424	-		PP_2775	0.32	-0.4
3,160,444	+		PP_2775	0.34	+1.3
3,160,444	+		PP_2775	0.34	-0.9
3,160,456	+		PP_2775	0.35	+0.5
3,160,471	+		PP_2775	0.37	-0.7
3,160,480	-		PP_2775	0.38	+1.2
3,160,480	-		PP_2775	0.38	+0.4
3,160,490	-		PP_2775	0.38	+0.2
3,160,585	+		PP_2775	0.48	+0.2
3,160,586	-		PP_2775	0.48	-0.7
3,160,587	+		PP_2775	0.48	+0.8
3,160,684	+		PP_2775	0.57	-0.3
3,160,685	-		PP_2775	0.57	+1.2
3,160,717	+		PP_2775	0.60	+0.1
3,160,816	+		PP_2775	0.70	+0.7