Experiment: pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_2765 and PP_2766 are separated by 11 nucleotides PP_2766 and PP_2767 are separated by 9 nucleotides PP_2767 and PP_2768 overlap by 25 nucleotides
PP_2765: PP_2765 - putative Sulfonate monooxygenase MsuD, at 3,148,794 to 3,149,885
_2765
PP_2766: PP_2766 - Long-chain-fatty-acid--CoA ligase-related protein, at 3,149,897 to 3,151,027
_2766
PP_2767: PP_2767 - putative Branched-chain amino acid ABC transporter, ATP-binding protein, at 3,151,037 to 3,151,870
_2767
PP_2768: PP_2768 - putative Branched-chain amino acid ABC transporter, permease protein, at 3,151,846 to 3,152,727
_2768
Position (kb)
3149
3150
3151
3152 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3149.301 kb on + strand, within PP_2765 at 3149.403 kb on + strand, within PP_2765 at 3149.715 kb on - strand, within PP_2765 at 3149.811 kb on + strand at 3150.692 kb on + strand, within PP_2766 at 3150.692 kb on + strand, within PP_2766 at 3150.692 kb on + strand, within PP_2766 at 3150.693 kb on - strand, within PP_2766 at 3150.693 kb on - strand, within PP_2766 at 3150.704 kb on + strand, within PP_2766 at 3150.704 kb on + strand, within PP_2766 at 3150.704 kb on + strand, within PP_2766 at 3150.705 kb on - strand, within PP_2766 at 3150.726 kb on + strand, within PP_2766 at 3150.937 kb on + strand at 3151.505 kb on + strand, within PP_2767 at 3151.897 kb on + strand at 3151.897 kb on + strand at 3151.897 kb on + strand at 3151.897 kb on + strand at 3151.898 kb on - strand at 3151.922 kb on + strand at 3151.931 kb on - strand at 3151.931 kb on - strand at 3151.974 kb on - strand, within PP_2768
Per-strain Table
Position Strand Gene LocusTag Fraction pH 6 remove 3,149,301 + PP_2765 0.46 -1.5 3,149,403 + PP_2765 0.56 -0.3 3,149,715 - PP_2765 0.84 +0.8 3,149,811 + +0.2 3,150,692 + PP_2766 0.70 -0.7 3,150,692 + PP_2766 0.70 +0.1 3,150,692 + PP_2766 0.70 -1.3 3,150,693 - PP_2766 0.70 -0.3 3,150,693 - PP_2766 0.70 -1.1 3,150,704 + PP_2766 0.71 +0.8 3,150,704 + PP_2766 0.71 -2.0 3,150,704 + PP_2766 0.71 -3.6 3,150,705 - PP_2766 0.71 -0.4 3,150,726 + PP_2766 0.73 -3.8 3,150,937 + -0.9 3,151,505 + PP_2767 0.56 -2.0 3,151,897 + -0.5 3,151,897 + +0.3 3,151,897 + -0.6 3,151,897 + -0.8 3,151,898 - +1.3 3,151,922 + +0.8 3,151,931 - +0.6 3,151,931 - +0.1 3,151,974 - PP_2768 0.15 -1.5
Or see this region's nucleotide sequence