Strain Fitness in Pseudomonas putida KT2440 around PP_2586

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,952,161	+		PP_2585	0.49	-0.3
2,952,307	+		PP_2585	0.59	-0.0
2,952,308	-		PP_2585	0.59	+0.2
2,952,308	-		PP_2585	0.59	+0.9
2,952,308	-		PP_2585	0.59	+1.8
2,952,592	+		PP_2585	0.77	+0.6
2,952,592	+		PP_2585	0.77	-0.9
2,952,859	+				+1.2
2,952,860	-				-1.2
2,953,003	+				+2.4
2,953,004	-				+0.3
2,953,036	+				+0.4
2,953,037	-				-1.5
2,953,037	-				-2.0
2,953,329	+		PP_2586	0.15	-1.1
2,953,330	-		PP_2586	0.16	-0.3
2,953,536	-		PP_2586	0.30	-3.3
2,953,590	+		PP_2586	0.34	+0.1
2,953,590	+		PP_2586	0.34	-0.0
2,953,591	-		PP_2586	0.34	-1.8
2,953,591	-		PP_2586	0.34	-2.7
2,953,591	-		PP_2586	0.34	-0.5
2,953,708	-		PP_2586	0.43	+0.8
2,953,708	-		PP_2586	0.43	+0.8
2,953,708	-		PP_2586	0.43	-0.2
2,953,708	-		PP_2586	0.43	-0.2
2,953,773	+		PP_2586	0.48	+0.7
2,954,103	+		PP_2586	0.71	+0.3
2,954,103	+		PP_2586	0.71	+1.8
2,954,103	+		PP_2586	0.71	-0.5
2,954,103	+		PP_2586	0.71	-1.8
2,954,103	+		PP_2586	0.71	-1.9
2,954,103	+		PP_2586	0.71	-1.3
2,954,103	+		PP_2586	0.71	+0.9
2,954,103	+		PP_2586	0.71	-0.7
2,954,104	-		PP_2586	0.72	-1.4
2,954,104	-		PP_2586	0.72	+0.5
2,954,104	-		PP_2586	0.72	+0.7
2,954,104	-		PP_2586	0.72	-1.0
2,954,104	-		PP_2586	0.72	+0.8
2,954,121	+		PP_2586	0.73	-0.5
2,954,122	-		PP_2586	0.73	+1.6
2,954,122	-		PP_2586	0.73	-1.4
2,954,122	-		PP_2586	0.73	-1.3
2,954,145	+		PP_2586	0.74	+2.8
2,954,145	+		PP_2586	0.74	-1.5
2,954,146	-		PP_2586	0.75	-0.1
2,954,214	+		PP_2586	0.79	-1.8
2,954,215	-		PP_2586	0.80	+0.6
2,954,354	+		PP_2586	0.90	-0.2
2,954,355	-		PP_2586	0.90	+0.8
2,954,373	+				+0.5
2,954,374	-				-0.5
2,954,374	-				+0.4
2,954,374	-				+0.7
2,954,470	+				-1.2
2,954,470	+				+1.6
2,954,480	-				-0.8
2,954,480	-				-1.2
2,954,491	+				-0.5
2,954,491	+				+0.6
2,954,491	+				-1.4
2,954,492	-				+0.7
2,954,492	-				-0.9
2,954,502	-				-2.6
2,954,502	-				+3.2
2,954,719	-				+1.2
2,954,719	-				+3.2
2,954,774	+				-0.1
2,954,775	-				+4.0
2,954,775	-				+3.6
2,954,913	+		PP_2587	0.16	-0.6
2,954,914	-		PP_2587	0.16	-1.0
2,955,015	+		PP_2587	0.28	-1.5
2,955,034	-		PP_2587	0.30	-0.8
2,955,035	-		PP_2587	0.30	-0.2
2,955,070	-		PP_2587	0.35	+0.4
2,955,114	+		PP_2587	0.40	-4.5
2,955,115	-		PP_2587	0.40	-1.1
2,955,117	+		PP_2587	0.40	-0.3
2,955,118	-		PP_2587	0.40	+1.9
2,955,118	-		PP_2587	0.40	+1.0
2,955,118	-		PP_2587	0.40	+0.1
2,955,162	+				+0.8
2,955,162	+		PP_2587	0.46	-0.2
2,955,163	-		PP_2587	0.46	+0.8
2,955,269	-		PP_2587	0.58	+0.2
2,955,344	+		PP_2587	0.67	+3.2
2,955,345	-		PP_2587	0.67	-0.4
2,955,345	-		PP_2587	0.67	-1.0
2,955,345	-		PP_2587	0.67	-1.2