Strain Fitness in Pseudomonas putida KT2440 around PP_2551

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,895,769	+				-1.0
2,895,857	+				-0.5
2,895,857	+				+0.7
2,895,858	-				-0.3
2,896,077	+				+0.8
2,896,078	-		PP_2550	0.35	-0.3
2,896,222	+		PP_2550	0.55	+0.8
2,896,223	-		PP_2550	0.55	+1.2
2,896,223	-		PP_2550	0.55	+1.0
2,896,524	+				-0.4
2,896,524	+				-0.0
2,896,524	+				-2.2
2,896,524	+				-0.5
2,896,525	-				+0.5
2,896,525	-				+1.0
2,896,525	-				+0.8
2,896,525	-				-0.2
2,896,525	-				+0.8
2,896,525	-				-1.2
2,896,747	+				-3.7
2,896,747	+				-0.7
2,896,865	+		PP_2551	0.19	+1.5
2,896,865	+		PP_2551	0.19	+1.0
2,896,865	+		PP_2551	0.19	+1.7
2,896,866	-		PP_2551	0.19	+0.8
2,896,866	-		PP_2551	0.19	+0.8
2,896,874	-		PP_2551	0.20	-2.5
2,897,000	+		PP_2551	0.34	+0.7
2,897,097	-				-0.2
2,897,197	-		PP_2551	0.54	+0.8
2,897,255	+		PP_2551	0.61	-1.2
2,897,264	+		PP_2551	0.62	-0.1
2,897,265	-		PP_2551	0.62	+0.5
2,897,382	+		PP_2551	0.74	-0.2
2,897,631	+				-0.2
2,897,631	+				+1.1
2,897,632	-				-0.9
2,897,663	-				-0.5
2,897,670	+				-0.5
2,897,671	-				+0.8
2,897,671	-				+0.3
2,897,671	-				+0.4
2,897,773	-				+0.8
2,897,885	-				+0.6
2,897,885	-				-2.0
2,897,959	-				-1.0
2,898,004	+		PP_2552	0.16	-0.8
2,898,004	+		PP_2552	0.16	-0.2
2,898,004	+		PP_2552	0.16	-0.5
2,898,010	+		PP_2552	0.17	-1.6
2,898,011	-		PP_2552	0.17	-0.2
2,898,247	+		PP_2552	0.33	-0.7
2,898,248	-		PP_2552	0.33	+1.2
2,898,257	+		PP_2552	0.34	+0.6
2,898,257	+		PP_2552	0.34	+1.1
2,898,258	-		PP_2552	0.34	+1.7
2,898,298	+		PP_2552	0.37	+1.8
2,898,298	+		PP_2552	0.37	-0.6
2,898,366	+		PP_2552	0.42	-1.0
2,898,395	-		PP_2552	0.44	-1.5