Strain Fitness in Pseudomonas putida KT2440 around PP_2549

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,893,348	+		PP_2548	0.26	-3.3
2,893,348	+		PP_2548	0.26	+4.3
2,893,455	+		PP_2548	0.34	+0.8
2,893,455	+		PP_2548	0.34	+0.6
2,893,455	+		PP_2548	0.34	+1.1
2,893,456	-		PP_2548	0.34	-0.9
2,893,503	+		PP_2548	0.37	-0.3
2,893,504	-		PP_2548	0.37	-1.6
2,893,504	-		PP_2548	0.37	+0.5
2,893,731	+		PP_2548	0.55	+0.6
2,893,731	+		PP_2548	0.55	+0.6
2,893,732	-		PP_2548	0.55	-0.5
2,894,169	+		PP_2548	0.88	+0.2
2,894,321	+				+0.7
2,894,321	+				+0.2
2,894,321	+				+1.6
2,894,321	+				-2.9
2,894,322	-				-0.2
2,894,392	-				+1.2
2,894,447	+				+2.7
2,894,448	-				+0.4
2,894,583	-		PP_2549	0.17	-1.7
2,894,653	+		PP_2549	0.22	-0.0
2,894,654	-		PP_2549	0.22	+1.8
2,894,654	-		PP_2549	0.22	+3.4
2,894,948	+		PP_2549	0.44	+1.8
2,894,948	+		PP_2549	0.44	-1.4
2,894,949	-		PP_2549	0.44	+0.6
2,894,949	-		PP_2549	0.44	+0.4
2,894,998	-		PP_2549	0.47	+0.1
2,895,034	-		PP_2549	0.50	+1.1
2,895,034	-		PP_2549	0.50	+1.8
2,895,201	-				+0.8
2,895,203	+		PP_2549	0.62	-2.2
2,895,204	-		PP_2549	0.62	+0.8
2,895,274	-		PP_2549	0.67	+1.0
2,895,449	+		PP_2549	0.80	+1.3
2,895,449	+		PP_2549	0.80	+0.8
2,895,449	+		PP_2549	0.80	+1.2
2,895,462	-		PP_2549	0.80	+0.8
2,895,769	+				-1.0
2,895,857	+				-0.5
2,895,857	+				+0.7
2,895,858	-				-0.3
2,896,077	+				+0.8
2,896,078	-		PP_2550	0.35	-0.3
2,896,222	+		PP_2550	0.55	+0.8
2,896,223	-		PP_2550	0.55	+1.2
2,896,223	-		PP_2550	0.55	+1.0
2,896,524	+				-0.4
2,896,524	+				-0.0
2,896,524	+				-2.2
2,896,524	+				-0.5
2,896,525	-				+0.5
2,896,525	-				+1.0
2,896,525	-				+0.8
2,896,525	-				-0.2
2,896,525	-				+0.8
2,896,525	-				-1.2