Strain Fitness in Pseudomonas putida KT2440 around PP_2544

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,889,458	+		PP_2543	0.33	+0.4
2,889,459	-		PP_2543	0.33	-2.3
2,889,759	-		PP_2543	0.54	-0.7
2,889,759	-		PP_2543	0.54	-1.1
2,889,759	-		PP_2543	0.54	-0.7
2,889,827	+		PP_2543	0.59	-0.2
2,889,828	-		PP_2543	0.59	-3.2
2,889,869	+		PP_2543	0.62	+4.1
2,889,870	-		PP_2543	0.62	+0.4
2,890,062	+		PP_2543	0.76	-3.9
2,890,062	+		PP_2543	0.76	-0.3
2,890,063	-				+0.8
2,890,063	-		PP_2543	0.76	+0.7
2,890,063	-		PP_2543	0.76	+0.1
2,890,063	-		PP_2543	0.76	-2.2
2,890,154	+		PP_2543	0.82	-2.9
2,890,155	-		PP_2543	0.82	-0.1
2,890,155	-		PP_2543	0.82	+0.8
2,890,219	-		PP_2543	0.87	-0.2
2,890,253	+		PP_2543	0.89	-0.5
2,890,253	+		PP_2543	0.89	-2.1
2,890,254	-		PP_2543	0.89	-0.4
2,890,254	-		PP_2543	0.89	-1.2
2,890,390	+				-1.3
2,890,403	+				-0.7
2,890,404	-				+0.6
2,890,567	-		PP_2544	0.79	+0.5
2,890,567	-		PP_2544	0.79	+0.8
2,890,628	+				+1.0
2,890,667	+				-3.2
2,890,667	+				+4.3
2,890,668	-				-0.6
2,890,668	-				+1.0
2,890,668	-				-0.8
2,890,668	-				-1.1
2,890,672	+				-0.3
2,890,672	+				+0.0
2,890,672	+				-0.7
2,890,672	+				-0.7
2,890,673	-				-0.3
2,890,673	-				+1.4
2,890,673	-				-0.2
2,890,680	+				-1.4
2,890,681	-				-1.5
2,890,681	-				+2.4
2,890,681	-				-0.7
2,890,681	-				+0.5
2,890,681	-				+0.8
2,890,681	-				-0.8
2,890,681	-				-2.3
2,890,724	+				-3.2
2,891,048	+		PP_2545	0.47	+1.0
2,891,216	+		PP_2545	0.68	+2.4
2,891,216	+		PP_2545	0.68	+3.2
2,891,217	-		PP_2545	0.68	+1.7
2,891,217	-		PP_2545	0.68	-1.9
2,891,270	+		PP_2545	0.74	-0.2
2,891,270	+		PP_2545	0.74	+0.5
2,891,270	+		PP_2545	0.74	+1.0
2,891,270	+		PP_2545	0.74	-0.6
2,891,270	+		PP_2545	0.74	-0.5
2,891,270	+		PP_2545	0.74	+3.8
2,891,339	+		PP_2545	0.83	-0.9
2,891,339	+		PP_2545	0.83	+1.3
2,891,387	+		PP_2545	0.89	+1.0
2,891,387	+		PP_2545	0.89	-0.2
2,891,388	-		PP_2545	0.89	-0.5
2,891,503	+				-3.1
2,891,504	-				-2.2
2,891,504	-				-1.5
2,891,504	-				+0.1
2,891,509	+		PP_2546	0.11	+1.1
2,891,510	-		PP_2546	0.11	-1.0
2,891,510	-		PP_2546	0.11	-3.5
2,891,510	-		PP_2546	0.11	-1.0
2,891,582	-		PP_2546	0.30	-1.1
2,891,599	+		PP_2546	0.35	+1.4
2,891,599	+		PP_2546	0.35	-0.2
2,891,599	+		PP_2546	0.35	-0.6
2,891,600	-		PP_2546	0.35	-1.2