Strain Fitness in Pseudomonas putida KT2440 around PP_2542

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,886,300	+		PP_5536	0.21	+0.8
2,886,300	+		PP_5536	0.21	+0.6
2,886,412	+		PP_5536	0.34	-1.3
2,886,474	-		PP_5536	0.41	-0.5
2,886,474	-		PP_5536	0.41	+0.1
2,886,477	+		PP_5536	0.41	+1.0
2,886,516	+		PP_5536	0.46	+1.0
2,886,520	+		PP_5536	0.46	+0.3
2,886,561	+		PP_5536	0.51	-2.2
2,886,562	-		PP_5536	0.51	+0.8
2,886,586	+		PP_5536	0.54	+3.5
2,886,586	+		PP_5536	0.54	+1.3
2,886,587	-		PP_5536	0.54	+0.5
2,886,605	+		PP_5536	0.56	+1.5
2,886,606	-		PP_5536	0.56	-0.4
2,886,606	-		PP_5536	0.56	+0.8
2,886,611	+		PP_5536	0.57	+1.1
2,886,621	+		PP_5536	0.58	-0.8
2,886,703	+		PP_5536	0.67	-1.3
2,886,704	-		PP_5536	0.67	+0.6
2,886,704	-		PP_5536	0.67	+0.2
2,886,704	-		PP_5536	0.67	+0.5
2,886,704	-		PP_5536	0.67	+3.4
2,886,710	+		PP_5536	0.68	+0.3
2,886,710	+		PP_5536	0.68	+3.5
2,886,710	+		PP_5536	0.68	-1.8
2,886,720	+		PP_5536	0.69	+1.4
2,886,720	+		PP_5536	0.69	+0.2
2,886,721	-		PP_5536	0.69	-1.6
2,886,734	+		PP_5536	0.71	-0.2
2,886,735	-		PP_5536	0.71	+0.1
2,886,826	+		PP_5536	0.81	-0.3
2,886,871	-		PP_5536	0.86	+1.8
2,886,979	-				+0.5
2,886,983	-				-0.4
2,886,986	+				-0.7
2,886,987	-				+0.6
2,886,988	+				-1.7
2,887,039	+				+0.1
2,887,084	+				+1.4
2,887,173	-				-0.4
2,887,245	+				-0.5
2,887,246	-				-0.0
2,887,246	-				-0.2
2,887,313	-				-1.2
2,887,383	-				+1.8
2,887,458	+		PP_2542	0.15	-0.2
2,887,458	+		PP_2542	0.15	+1.9
2,887,458	+		PP_2542	0.15	+1.8
2,887,458	+		PP_2542	0.15	+1.1
2,887,459	-		PP_2542	0.15	-0.9
2,887,459	-		PP_2542	0.15	-1.7
2,887,459	-		PP_2542	0.15	-1.7
2,887,459	-		PP_2542	0.15	+1.1
2,887,596	+		PP_2542	0.25	-0.7
2,887,597	-		PP_2542	0.25	+1.4
2,887,597	-		PP_2542	0.25	-0.5
2,887,597	-		PP_2542	0.25	+0.6
2,887,690	-		PP_2542	0.31	+0.8
2,887,725	+		PP_2542	0.34	+3.0
2,887,726	-		PP_2542	0.34	-2.2
2,887,726	-		PP_2542	0.34	-1.0
2,887,737	+		PP_2542	0.35	-1.7
2,887,737	+		PP_2542	0.35	-1.2
2,887,984	+		PP_2542	0.52	+1.1
2,887,985	-		PP_2542	0.52	-1.0
2,887,997	+		PP_2542	0.53	-1.2
2,887,998	-		PP_2542	0.53	-0.2
2,888,289	+		PP_2542	0.73	-0.7
2,888,289	+		PP_2542	0.73	-0.1
2,888,364	+		PP_2542	0.79	-0.7
2,888,364	+		PP_2542	0.79	+0.5
2,888,511	-		PP_2542	0.89	-0.1
2,888,524	+		PP_2542	0.90	-0.8
2,888,536	-				-1.5
2,888,711	+				+0.8
2,888,711	+				+0.6
2,888,712	-				+3.2
2,888,727	+				+0.8
2,888,727	+				-1.6
2,888,727	+				+3.2
2,888,727	+				+0.8
2,888,727	+				+0.6
2,888,728	-				+2.8
2,888,728	-				+0.6
2,888,728	-				+5.4
2,888,729	+				-1.3
2,888,729	+				+1.3
2,888,729	+				+0.5
2,888,730	-				-1.2
2,888,786	-				+0.8
2,888,790	+				-1.0
2,888,790	+				+0.2
2,888,791	-				+0.4
2,888,791	-				+0.2
2,888,811	+				-1.0
2,888,811	+				-0.2
2,888,811	+				-1.0
2,888,812	-				+1.4
2,888,812	-				+0.3
2,888,812	-				+1.2
2,888,812	-				-0.2
2,888,885	+				+2.0
2,888,909	+				+0.8
2,888,909	+				+1.0
2,888,920	+				+1.4
2,888,984	-				+0.7
2,889,167	+		PP_2543	0.12	-0.5
2,889,347	+		PP_2543	0.25	-0.0
2,889,347	+		PP_2543	0.25	+0.4
2,889,347	+		PP_2543	0.25	+0.8
2,889,348	-		PP_2543	0.25	+0.8
2,889,348	-		PP_2543	0.25	-1.7
2,889,348	-		PP_2543	0.25	-1.2
2,889,458	+		PP_2543	0.33	+0.4
2,889,459	-		PP_2543	0.33	-2.3