Strain Fitness in Pseudomonas putida KT2440 around PP_2535

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,879,167	-				-0.3
2,879,180	+				+1.9
2,879,181	-				-1.0
2,879,281	-		PP_2534	0.13	+3.2
2,879,281	-		PP_2534	0.13	+1.3
2,879,281	-		PP_2534	0.13	+0.6
2,879,281	-		PP_2534	0.13	-3.7
2,879,333	-		PP_2534	0.19	-0.5
2,879,406	-		PP_2534	0.27	-2.1
2,879,408	-		PP_2534	0.27	-0.7
2,879,434	+		PP_2534	0.30	+0.2
2,879,434	+		PP_2534	0.30	-0.7
2,879,434	+		PP_2534	0.30	+0.9
2,879,435	-		PP_2534	0.30	+3.7
2,879,435	-		PP_2534	0.30	-0.7
2,879,535	+		PP_2534	0.41	-0.9
2,879,536	-		PP_2534	0.41	-0.2
2,879,548	-		PP_2534	0.43	-0.4
2,879,548	-		PP_2534	0.43	-0.0
2,879,657	+		PP_2534	0.55	-1.2
2,879,658	-		PP_2534	0.55	+0.2
2,879,658	-		PP_2534	0.55	+1.6
2,879,863	-		PP_2534	0.78	+0.0
2,880,105	+				+0.2
2,880,105	+				+0.8
2,880,105	+				+2.4
2,880,105	+				+0.5
2,880,105	+				+1.9
2,880,105	+				+0.1
2,880,106	-				+2.3
2,880,106	-				-2.5
2,880,128	+				-0.1
2,880,146	+				-0.1
2,880,146	+				-2.2
2,880,146	+				+1.6
2,880,146	+				+0.9
2,880,164	+				-2.5
2,880,304	-		PP_2535	0.12	+2.1
2,880,304	-		PP_2535	0.12	+0.2
2,880,304	-		PP_2535	0.12	+0.9
2,880,304	-		PP_2535	0.12	+0.4
2,880,435	+		PP_2535	0.23	-2.7
2,880,436	-		PP_2535	0.24	+2.0
2,880,691	-		PP_2535	0.45	-0.4
2,880,825	+		PP_2535	0.57	+0.9
2,880,826	-		PP_2535	0.57	+1.9
2,880,826	-		PP_2535	0.57	-1.5
2,880,826	-		PP_2535	0.57	+2.9
2,881,270	+				+0.1
2,881,271	-				-0.2
2,881,271	-				+0.9
2,881,309	+				-2.2
2,881,310	-				-1.7
2,881,332	+				+1.6
2,881,333	-				-0.1
2,881,333	-				+2.4
2,881,333	-				+0.9
2,881,371	-				-1.2
2,881,371	-				-1.9
2,881,371	-				-1.7
2,881,386	+				-0.8
2,881,389	+				-0.1
2,881,390	-				-0.3
2,881,446	+				-0.9
2,881,446	+				-0.8
2,881,447	-				-3.0
2,881,447	-				-0.4
2,881,447	-				-0.4
2,881,557	+		PP_2536	0.27	+1.9
2,881,557	+		PP_2536	0.27	+0.9
2,881,557	+		PP_2536	0.27	-0.1
2,881,557	+		PP_2536	0.27	+1.2
2,881,558	-		PP_2536	0.27	-1.7
2,881,558	-		PP_2536	0.27	-1.9
2,881,558	-		PP_2536	0.27	-1.0
2,881,599	+		PP_2536	0.34	-0.8
2,881,683	+		PP_2536	0.47	+2.2
2,881,683	+		PP_2536	0.47	-2.8
2,881,797	+		PP_2536	0.66	+3.7
2,881,810	+		PP_2536	0.68	-0.5
2,881,811	-		PP_2536	0.68	+0.2
2,881,961	+				-0.9
2,881,961	+				+0.6
2,881,961	+				-1.7
2,881,962	-				-1.5
2,882,112	+				-1.4
2,882,112	+				+0.6
2,882,112	+				-2.0
2,882,112	+				+0.9
2,882,113	-				+0.9
2,882,124	+				-0.5
2,882,156	-				-0.1
2,882,156	-				-0.7
2,882,156	-				+0.9
2,882,156	-				+0.1
2,882,156	-				+1.7
2,882,163	+				+0.4
2,882,164	-				+0.3
2,882,164	-				+0.4
2,882,167	-				-1.2
2,882,247	-		PP_2537	0.14	+0.1