Strain Fitness in Pseudomonas putida KT2440 around PP_2501

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,846,412	-				+3.2
2,846,412	-		PP_2498	0.37	-2.3
2,846,437	-		PP_2498	0.48	+0.4
2,846,443	+		PP_2498	0.50	-3.3
2,846,443	+		PP_2498	0.50	-0.4
2,846,444	-		PP_2498	0.50	-0.1
2,846,444	-		PP_2498	0.50	-1.2
2,846,444	-		PP_2498	0.50	+0.0
2,846,464	+		PP_2498	0.59	-0.9
2,846,465	-		PP_2498	0.59	-0.0
2,846,465	-		PP_2498	0.59	-0.5
2,846,474	+		PP_2498	0.63	+0.9
2,846,475	-		PP_2498	0.63	-2.3
2,846,563	+				-3.4
2,846,563	+				+2.6
2,846,618	+				-1.7
2,846,618	+				-3.4
2,846,700	-				-1.0
2,846,915	-		PP_2499	0.82	+1.8
2,846,915	-		PP_2499	0.82	-1.5
2,846,944	-				-1.7
2,847,096	-		PP_2500	0.50	+1.9
2,847,096	-		PP_2500	0.50	+1.7
2,847,173	-		PP_2500	0.76	-0.3
2,847,179	-		PP_2500	0.78	+0.3
2,847,179	-		PP_2500	0.78	+0.5
2,847,202	+		PP_2500	0.86	-2.8
2,847,203	-				+0.9
2,847,347	-				-0.2
2,847,347	-				+0.2
2,847,399	+		PP_2501	0.11	+1.3
2,847,411	+		PP_2501	0.12	+0.5
2,847,412	-		PP_2501	0.12	-1.5
2,847,412	-		PP_2501	0.12	-0.8
2,847,412	-		PP_2501	0.12	-3.4
2,847,588	-		PP_2501	0.25	-2.1
2,847,588	-		PP_2501	0.25	+0.6
2,847,716	+		PP_2501	0.34	+1.6
2,847,717	-		PP_2501	0.34	+0.2
2,847,717	-		PP_2501	0.34	-1.1
2,847,717	-		PP_2501	0.34	-3.3
2,847,901	+		PP_2501	0.47	-0.9
2,847,982	+		PP_2501	0.53	-0.9
2,847,982	+		PP_2501	0.53	+4.2
2,847,983	-		PP_2501	0.53	-0.7
2,848,012	-		PP_2501	0.55	-0.5
2,848,058	+		PP_2501	0.58	-2.1
2,848,059	-		PP_2501	0.58	-0.9
2,848,059	-		PP_2501	0.58	+0.9
2,848,059	-		PP_2501	0.58	-0.7
2,848,059	-		PP_2501	0.58	+0.9
2,848,172	+		PP_2501	0.66	+2.0
2,848,172	+		PP_2501	0.66	-2.3
2,848,173	-		PP_2501	0.66	-0.4
2,848,209	+		PP_2501	0.69	+0.3
2,848,209	+		PP_2501	0.69	-2.8
2,848,210	-		PP_2501	0.69	+0.9
2,848,210	-		PP_2501	0.69	-3.5
2,848,210	-		PP_2501	0.69	-1.5
2,848,272	+		PP_2501	0.73	-1.3
2,848,337	+		PP_2501	0.78	-3.1
2,848,338	-				+1.1
2,848,473	-		PP_2501	0.88	+0.0
2,848,488	-		PP_2501	0.89	+1.6
2,848,516	+				-0.3
2,848,516	+				+1.8
2,848,636	-				+0.8
2,848,651	+				+0.1
2,848,739	-				-1.1
2,848,770	-				-1.1
2,848,784	-				+0.9
2,848,784	-				-0.3
2,848,796	-				-1.8
2,848,813	-				-0.3
2,848,822	+				-0.1
2,848,829	+				+1.5
2,848,883	+				-0.7
2,848,883	+				+0.4
2,848,884	-				+1.0
2,848,884	-				-2.5
2,848,961	+				+0.3
2,848,961	+				+0.9
2,848,962	-				+1.5
2,849,000	-				-1.1
2,849,013	-				+2.6
2,849,013	-				+1.1
2,849,082	+				-1.1
2,849,109	+				-1.8
2,849,109	+				+2.9
2,849,109	+				+0.3
2,849,110	-				-0.4
2,849,110	-				-3.0
2,849,110	-				+0.7
2,849,110	-				-2.3
2,849,110	-				-0.5
2,849,110	-				+1.0
2,849,258	-				-0.8
2,849,350	+		PP_2502	0.20	-0.4
2,849,350	+		PP_2502	0.20	-0.5
2,849,420	-		PP_2502	0.27	+0.6
2,849,567	-		PP_2502	0.43	-1.1
2,849,567	-		PP_2502	0.43	-0.6
2,849,567	-		PP_2502	0.43	+1.8
2,849,567	-		PP_2502	0.43	-0.5