Strain Fitness in Pseudomonas putida KT2440 around PP_2494

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,841,611	-		PP_2492	0.82	-1.5
2,841,627	+		PP_2492	0.83	-0.2
2,841,628	-		PP_2492	0.83	-1.0
2,841,628	-		PP_2492	0.83	-0.1
2,841,628	-		PP_2492	0.83	-0.1
2,841,628	-		PP_2492	0.83	-1.7
2,841,628	-		PP_2492	0.83	+1.7
2,841,630	-		PP_2492	0.83	-1.7
2,841,660	+		PP_2492	0.86	-0.3
2,841,660	+		PP_2492	0.86	+0.2
2,841,660	+		PP_2492	0.86	-0.7
2,841,660	+		PP_2492	0.86	+0.9
2,841,661	+		PP_2492	0.86	-1.1
2,841,661	-		PP_2492	0.86	-0.4
2,841,715	+				+0.2
2,841,716	-				+1.9
2,841,716	-				-2.4
2,841,716	-				-1.1
2,841,777	-				-0.1
2,841,785	+				-0.5
2,841,786	-				+0.6
2,841,786	-				+1.6
2,841,786	-				-0.0
2,841,821	+				+0.9
2,841,821	+				+0.3
2,841,914	-				-1.0
2,841,929	-				+0.0
2,841,943	-				-2.0
2,842,016	+				+1.3
2,842,016	+				-0.3
2,842,017	-				-2.7
2,842,046	+				-1.1
2,842,047	-				-2.6
2,842,060	-				-1.3
2,842,077	-				+0.1
2,842,082	+				-0.1
2,842,127	+				+0.9
2,842,132	+		PP_2493	0.11	+1.5
2,842,132	+		PP_2493	0.11	-1.1
2,842,132	+		PP_2493	0.11	-0.2
2,842,133	-		PP_2493	0.11	+0.9
2,842,133	-		PP_2493	0.11	-2.7
2,842,133	-		PP_2493	0.11	+0.9
2,842,133	-		PP_2493	0.11	-2.6
2,842,133	-		PP_2493	0.11	+0.1
2,842,133	-		PP_2493	0.11	+0.9
2,842,134	+		PP_2493	0.11	+0.3
2,842,134	+		PP_2493	0.11	-1.2
2,842,134	+		PP_2493	0.11	+0.9
2,842,134	+		PP_2493	0.11	-0.1
2,842,135	-		PP_2493	0.11	-0.1
2,842,135	-		PP_2493	0.11	-0.1
2,842,135	-		PP_2493	0.11	+0.4
2,842,158	-				+1.9
2,842,158	-		PP_2493	0.15	-1.5
2,842,211	+		PP_2493	0.25	+0.4
2,842,232	+		PP_2493	0.29	-0.1
2,842,233	-		PP_2493	0.29	+3.6
2,842,233	-		PP_2493	0.29	+0.1
2,842,233	-		PP_2493	0.29	+0.9
2,842,341	+		PP_2493	0.49	+1.5
2,842,427	+		PP_2493	0.64	+0.4
2,842,427	+		PP_2493	0.64	-1.0
2,842,428	-		PP_2493	0.65	+3.0
2,842,578	+				+0.8
2,842,910	+		PP_2494	0.32	-1.1
2,842,986	+		PP_2494	0.39	+1.9
2,843,042	-		PP_2494	0.45	-0.5
2,843,042	-		PP_2494	0.45	-1.3
2,843,042	-		PP_2494	0.45	-3.9
2,843,107	-		PP_2494	0.51	-0.3
2,843,146	+		PP_2494	0.55	-2.8
2,843,293	+		PP_2494	0.70	-1.9
2,843,294	-		PP_2494	0.70	-0.9
2,843,679	+				-1.7
2,843,764	-		PP_2495	0.13	+0.4
2,843,883	+		PP_2495	0.25	+0.5
2,843,883	+		PP_2495	0.25	-1.7
2,844,013	-		PP_2495	0.38	-0.1
2,844,107	+		PP_2495	0.47	+1.6
2,844,108	-		PP_2495	0.47	-2.3
2,844,113	+		PP_2495	0.47	-1.3
2,844,113	+		PP_2495	0.47	+0.2
2,844,113	+		PP_2495	0.47	-2.1
2,844,114	-		PP_2495	0.48	-0.4
2,844,114	-		PP_2495	0.48	-1.7
2,844,114	-		PP_2495	0.48	-0.4
2,844,172	-		PP_2495	0.53	+0.4
2,844,172	-		PP_2495	0.53	-1.9
2,844,325	+		PP_2495	0.69	-3.6
2,844,326	-		PP_2495	0.69	-1.5
2,844,343	+		PP_2495	0.70	+0.9
2,844,343	+		PP_2495	0.70	+1.0
2,844,344	-		PP_2495	0.70	+1.5
2,844,344	-		PP_2495	0.70	+1.3
2,844,344	-		PP_2495	0.70	+0.7
2,844,344	-		PP_2495	0.70	+1.2
2,844,357	+		PP_2495	0.72	+2.9
2,844,357	+		PP_2495	0.72	-1.0
2,844,358	-		PP_2495	0.72	+4.2
2,844,358	-		PP_2495	0.72	+0.6
2,844,396	+		PP_2495	0.76	-0.1
2,844,396	+		PP_2495	0.76	-0.3
2,844,396	+		PP_2495	0.76	-1.3
2,844,396	+		PP_2495	0.76	-0.9
2,844,400	+		PP_2495	0.76	-2.5
2,844,400	+		PP_2495	0.76	-1.2
2,844,400	+		PP_2495	0.76	-2.1
2,844,401	-		PP_2495	0.76	-1.9
2,844,401	-		PP_2495	0.76	-1.0
2,844,401	-		PP_2495	0.76	-0.1
2,844,401	-		PP_2495	0.76	-0.5
2,844,401	-		PP_2495	0.76	-0.3
2,844,401	-		PP_2495	0.76	-0.8
2,844,401	-		PP_2495	0.76	+1.5
2,844,401	-		PP_2495	0.76	-0.6
2,844,484	+		PP_2495	0.84	+1.5
2,844,484	+		PP_2495	0.84	-1.3
2,844,484	+		PP_2495	0.84	-0.5
2,844,485	-		PP_2495	0.84	-2.1
2,844,485	-		PP_2495	0.84	-0.5
2,844,486	+		PP_2495	0.85	-1.3