Strain Fitness in Pseudomonas putida KT2440 around PP_2390

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,727,277	+				-0.1
2,727,277	+				-4.4
2,727,278	-				-3.2
2,727,297	-				-3.3
2,727,297	-				-3.7
2,727,316	-				-3.0
2,727,337	+				-4.7
2,727,339	+				-2.8
2,727,340	-				-0.1
2,727,436	+		PP_2389	0.14	+0.9
2,727,437	-				-0.7
2,727,490	+		PP_2389	0.21	+0.9
2,727,759	+		PP_2389	0.55	-4.4
2,727,760	-		PP_2389	0.55	+2.9
2,727,760	-		PP_2389	0.55	-0.3
2,727,877	+		PP_2389	0.70	-1.1
2,727,877	+		PP_2389	0.70	-4.5
2,727,877	+		PP_2389	0.70	-2.8
2,727,877	+		PP_2389	0.70	-2.9
2,727,878	-		PP_2389	0.70	-0.7
2,727,878	-		PP_2389	0.70	+1.1
2,727,878	-		PP_2389	0.70	+0.1
2,727,878	-		PP_2389	0.70	+1.8
2,727,878	-		PP_2389	0.70	+1.2
2,727,878	-		PP_2389	0.70	-1.1
2,727,954	+		PP_2389	0.80	-2.3
2,728,001	+		PP_2389	0.86	-3.0
2,728,018	-		PP_2389	0.88	+0.9
2,728,232	+				-5.2
2,728,240	-				+1.6
2,728,246	-				+1.2
2,728,331	-				-0.2
2,728,696	+		PP_2390	0.46	-3.3
2,728,782	-		PP_2390	0.55	-3.8
2,728,782	-		PP_2390	0.55	-1.6
2,728,796	-		PP_2390	0.57	-3.6
2,729,000	+		PP_2390	0.79	-1.1
2,729,000	+		PP_2390	0.79	-2.4
2,729,075	-		PP_2390	0.87	+0.9
2,729,077	+		PP_2390	0.87	-2.7
2,729,077	+		PP_2390	0.87	-3.4
2,729,077	+		PP_2390	0.87	-5.1
2,729,078	-		PP_2390	0.87	-2.7
2,729,078	-		PP_2390	0.87	-4.6
2,729,078	-		PP_2390	0.87	-3.3
2,729,078	-		PP_2390	0.87	-3.0
2,729,078	-		PP_2390	0.87	-3.8
2,729,078	-		PP_2390	0.87	-2.7
2,729,179	+				+1.8
2,729,179	+				-0.7
2,729,179	+				+1.3
2,729,179	+				+0.4
2,729,180	-				+1.7
2,729,180	-				+0.2
2,729,180	-				+0.9
2,729,223	-				+2.6
2,729,269	-				-0.5
2,729,363	-				-0.9
2,729,363	-				+4.0
2,729,436	+				-0.3
2,729,436	+				+0.2
2,729,437	-				+0.9
2,729,437	-				-0.7
2,729,437	-				+0.0
2,729,502	+				-1.8
2,729,503	-				-0.1
2,729,515	+				-0.7
2,729,515	+				-1.2
2,729,597	-				-0.3
2,729,597	-				-0.2
2,729,597	-				-0.0
2,729,612	+				+0.9
2,730,041	+		PP_2392	0.47	-0.1
2,730,042	-		PP_2392	0.47	+0.5
2,730,068	+		PP_2392	0.49	-1.1
2,730,069	-		PP_2392	0.49	-1.0
2,730,112	+				+2.5
2,730,112	+		PP_2392	0.53	-0.6
2,730,113	-		PP_2392	0.54	-3.7
2,730,118	+		PP_2392	0.54	+1.5
2,730,118	+		PP_2392	0.54	-0.1
2,730,118	+		PP_2392	0.54	+0.7
2,730,118	+		PP_2392	0.54	+0.9
2,730,119	-		PP_2392	0.54	-0.8
2,730,119	-		PP_2392	0.54	+2.7