Strain Fitness in Pseudomonas putida KT2440 around PP_2383

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,721,781	+		PP_2382	0.25	-2.1
2,721,834	+		PP_2382	0.29	+1.0
2,721,835	-		PP_2382	0.29	-0.8
2,721,835	-		PP_2382	0.29	-2.6
2,721,886	+		PP_2382	0.33	-1.6
2,721,886	+		PP_2382	0.33	+0.4
2,721,967	+		PP_2382	0.40	+1.5
2,721,967	+		PP_2382	0.40	-2.1
2,721,968	-		PP_2382	0.40	-2.7
2,721,968	-		PP_2382	0.40	+0.6
2,722,013	+		PP_2382	0.44	+2.0
2,722,013	+		PP_2382	0.44	-0.9
2,722,031	+		PP_2382	0.45	-0.0
2,722,031	+		PP_2382	0.45	+1.9
2,722,032	-		PP_2382	0.45	+2.1
2,722,038	-		PP_2382	0.46	+0.3
2,722,058	+		PP_2382	0.47	-2.7
2,722,058	+		PP_2382	0.47	+0.2
2,722,058	+		PP_2382	0.47	-1.4
2,722,058	+		PP_2382	0.47	-1.5
2,722,058	+		PP_2382	0.47	-1.2
2,722,059	-		PP_2382	0.48	+0.9
2,722,059	-		PP_2382	0.48	+2.5
2,722,090	+		PP_2382	0.50	+1.9
2,722,257	+		PP_2382	0.64	+2.3
2,722,362	+		PP_2382	0.72	-0.4
2,722,362	+		PP_2382	0.72	-3.4
2,722,362	+		PP_2382	0.72	-0.1
2,722,363	-		PP_2382	0.72	+2.9
2,722,407	-		PP_2382	0.76	-2.4
2,722,531	-		PP_2382	0.86	+0.1
2,722,613	+				-2.3
2,722,634	-				-1.8
2,722,634	-				+0.2
2,722,691	+				-0.7
2,722,691	+				-1.1
2,722,691	+				+2.1
2,722,691	+				+0.1
2,722,692	-				+1.3
2,722,692	-				+0.9
2,722,692	-				-1.1
2,722,692	-				+0.4
2,722,692	-				+2.1
2,722,695	+				+2.4
2,722,695	+				-0.1
2,722,696	-				+1.3
2,722,696	-				+0.3
2,722,696	-				-0.5
2,722,696	-				-0.4
2,722,696	-				-1.5
2,722,696	-				+1.0
2,722,711	+				+2.1
2,722,712	-				+0.2
2,722,713	+				+0.9
2,722,713	+				-1.3
2,722,713	+				-1.8
2,722,713	+				-0.0
2,722,713	+				-1.0
2,722,714	-				-0.1
2,722,714	-				-2.1
2,722,714	-				+1.2
2,722,714	-				+1.6
2,723,469	+		PP_2383	0.85	-0.4
2,723,469	+		PP_2383	0.85	-1.0
2,723,469	+		PP_2383	0.85	+1.3
2,723,469	+		PP_2383	0.85	+0.4
2,723,470	-		PP_2383	0.86	-2.6
2,723,470	-		PP_2383	0.86	-3.6
2,723,470	-		PP_2383	0.86	-2.5
2,723,470	-		PP_2383	0.86	-0.2
2,723,473	+		PP_2383	0.86	-0.9
2,723,474	-		PP_2383	0.86	-1.2
2,723,474	-		PP_2383	0.86	+3.5
2,723,509	+				-0.1
2,723,509	+				+0.4
2,723,510	-				-0.8
2,723,512	+				-0.9
2,723,512	+				+1.5
2,723,513	-				-1.3
2,723,648	+		PP_2384	0.19	+2.2
2,723,648	+		PP_2384	0.19	-2.2
2,723,648	+		PP_2384	0.19	+0.9
2,723,648	+		PP_2384	0.19	+0.5
2,723,682	-		PP_2384	0.30	-1.8
2,723,682	-		PP_2384	0.30	+1.2
2,723,682	-		PP_2384	0.30	+0.0
2,723,700	+		PP_2384	0.36	-1.1
2,723,850	+				+2.5
2,723,991	-		PP_2385	0.13	+1.9
2,723,991	-		PP_2385	0.13	-0.6
2,723,991	-		PP_2385	0.13	+1.3
2,724,176	+		PP_2385	0.40	+0.7
2,724,176	+		PP_2385	0.40	+1.4
2,724,177	-		PP_2385	0.40	+0.9
2,724,177	-		PP_2385	0.40	-0.5
2,724,231	-		PP_2385	0.48	-0.6
2,724,310	+		PP_2385	0.59	+0.9
2,724,332	+		PP_2385	0.62	-0.4
2,724,332	+		PP_2385	0.62	+0.5
2,724,332	+		PP_2385	0.62	+0.4
2,724,333	-		PP_2385	0.63	+1.0
2,724,333	-		PP_2385	0.63	-0.9