Strain Fitness in Pseudomonas putida KT2440 around PP_2057

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,339,923	+		PP_2056	0.43	+1.2
2,339,991	+		PP_2056	0.48	+2.5
2,339,992	-		PP_2056	0.48	-1.7
2,340,031	+		PP_2056	0.51	-1.6
2,340,031	+		PP_2056	0.51	-1.1
2,340,032	-		PP_2056	0.51	+0.9
2,340,032	-		PP_2056	0.51	-1.0
2,340,032	-		PP_2056	0.51	-0.2
2,340,244	+		PP_2056	0.68	-1.8
2,340,265	-		PP_2056	0.69	-2.3
2,340,274	+		PP_2056	0.70	-0.6
2,340,274	+		PP_2056	0.70	+0.2
2,340,274	+		PP_2056	0.70	-2.3
2,340,274	+		PP_2056	0.70	+0.7
2,340,274	+		PP_2056	0.70	+0.9
2,340,274	+		PP_2056	0.70	-0.1
2,340,275	-		PP_2056	0.70	-0.8
2,340,426	+		PP_2056	0.82	-0.5
2,340,754	+				-1.3
2,340,754	+				-1.3
2,340,754	+				+1.7
2,340,755	-				-0.7
2,340,755	-				-0.0
2,340,755	-				+1.4
2,340,755	-				+1.4
2,340,761	+				-0.7
2,340,823	+				+0.1
2,340,824	-				-0.2
2,340,838	-				-0.7
2,341,132	+		PP_2057	0.27	+1.5
2,341,132	+		PP_2057	0.27	+0.8
2,341,133	-				+0.9
2,341,133	-		PP_2057	0.27	+0.3
2,341,141	-		PP_2057	0.28	+1.9
2,341,165	+		PP_2057	0.29	-1.1
2,341,165	+		PP_2057	0.29	-0.8
2,341,166	-		PP_2057	0.30	-0.7
2,341,166	-		PP_2057	0.30	+0.8
2,341,166	-		PP_2057	0.30	-0.5
2,341,166	-		PP_2057	0.30	-0.8
2,341,206	-		PP_2057	0.33	+3.0
2,341,206	-		PP_2057	0.33	-3.3
2,341,206	-		PP_2057	0.33	-2.1
2,341,301	-		PP_2057	0.40	-2.9
2,341,399	-		PP_2057	0.47	+0.4
2,341,429	+		PP_2057	0.50	-1.2
2,341,430	-		PP_2057	0.50	+1.8
2,341,430	-		PP_2057	0.50	-0.7
2,341,430	-		PP_2057	0.50	-0.4
2,341,480	+		PP_2057	0.54	-3.4
2,341,480	+		PP_2057	0.54	-0.3
2,341,480	+		PP_2057	0.54	-1.6
2,341,481	-		PP_2057	0.54	-1.5
2,341,481	-		PP_2057	0.54	-0.1
2,341,481	-		PP_2057	0.54	-0.1
2,341,589	-		PP_2057	0.62	-1.6
2,341,687	-		PP_2057	0.69	-1.6
2,341,826	-		PP_2057	0.80	-0.5
2,341,826	-		PP_2057	0.80	-1.5
2,341,828	+		PP_2057	0.80	+2.2
2,341,828	+		PP_2057	0.80	-0.6
2,342,266	+				+0.2
2,342,266	+				+3.5
2,342,267	-				-2.5
2,342,298	+		PP_2058	0.12	-0.7
2,342,383	-		PP_2058	0.19	+1.0
2,342,599	+		PP_2058	0.36	+0.9
2,342,599	+		PP_2058	0.36	-0.1
2,342,600	-		PP_2058	0.36	-0.8
2,342,629	+		PP_2058	0.38	-1.0
2,342,630	-		PP_2058	0.38	+0.9
2,342,630	-		PP_2058	0.38	+0.7
2,342,722	-		PP_2058	0.46	+0.9
2,342,747	-		PP_2058	0.48	+1.5
2,342,791	+				-0.1
2,342,791	+		PP_2058	0.51	-0.5
2,342,791	+		PP_2058	0.51	-2.4
2,342,791	+		PP_2058	0.51	+2.9
2,342,791	+		PP_2058	0.51	+1.1
2,342,791	+		PP_2058	0.51	+0.3
2,342,792	-		PP_2058	0.51	+0.9
2,342,792	-		PP_2058	0.51	-0.8
2,342,792	-		PP_2058	0.51	-2.6
2,342,822	-		PP_2058	0.54	-2.7
2,342,848	+		PP_2058	0.56	+0.6
2,342,920	+		PP_2058	0.61	+1.2
2,342,920	+		PP_2058	0.61	-1.1
2,342,950	+		PP_2058	0.64	+0.3
2,342,951	-		PP_2058	0.64	+2.2
2,342,995	+		PP_2058	0.67	-0.7
2,342,996	-		PP_2058	0.68	-1.1
2,342,996	-		PP_2058	0.68	-0.3
2,343,013	-		PP_2058	0.69	+0.8
2,343,028	+		PP_2058	0.70	+0.6
2,343,029	-		PP_2058	0.70	-0.9
2,343,061	+		PP_2058	0.73	+0.0
2,343,061	+		PP_2058	0.73	+4.5
2,343,061	+		PP_2058	0.73	+3.7
2,343,062	-		PP_2058	0.73	-0.1
2,343,062	-		PP_2058	0.73	-0.3
2,343,063	+		PP_2058	0.73	+0.6
2,343,063	+		PP_2058	0.73	-0.0
2,343,063	+		PP_2058	0.73	-1.3
2,343,063	+		PP_2058	0.73	+2.4
2,343,082	+		PP_2058	0.74	-0.9
2,343,083	-		PP_2058	0.74	+0.9