Strain Fitness in Pseudomonas putida KT2440 around PP_2038

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,315,212	+				+2.9
2,315,213	-				+1.9
2,315,215	+				-0.3
2,315,216	-				+0.9
2,315,755	+		PP_2037	0.75	+0.4
2,315,755	+		PP_2037	0.75	+0.9
2,315,756	-		PP_2037	0.75	-0.3
2,315,756	-		PP_2037	0.75	-1.1
2,315,758	+		PP_2037	0.75	-1.8
2,315,758	+		PP_2037	0.75	-1.9
2,315,758	+		PP_2037	0.75	+0.3
2,315,758	+		PP_2037	0.75	-1.9
2,315,758	+		PP_2037	0.75	-0.4
2,315,759	-		PP_2037	0.75	+0.4
2,315,759	-		PP_2037	0.75	-0.5
2,315,759	-		PP_2037	0.75	-0.9
2,315,759	-		PP_2037	0.75	+0.4
2,315,759	-		PP_2037	0.75	-3.5
2,315,759	-		PP_2037	0.75	-1.1
2,315,832	-		PP_2037	0.85	-0.1
2,315,951	+				-0.4
2,315,952	-				+0.4
2,316,108	+				+1.6
2,316,109	-				+0.4
2,316,119	+				+1.1
2,316,119	+				+1.0
2,316,120	-				-1.4
2,316,131	-				-1.4
2,316,133	+				-0.5
2,316,133	+				-0.3
2,316,134	-				-1.1
2,316,134	-				-0.1
2,316,157	+				+0.3
2,316,175	-				-0.3
2,316,234	-				+3.5
2,316,234	-				-0.7
2,316,411	-		PP_2038	0.14	-1.1
2,316,605	+		PP_2038	0.26	-0.1
2,316,605	+		PP_2038	0.26	-2.8
2,316,605	+		PP_2038	0.26	+1.0
2,316,606	-		PP_2038	0.26	-0.3
2,316,606	-		PP_2038	0.26	+0.4
2,316,683	+		PP_2038	0.31	-1.4
2,316,683	+		PP_2038	0.31	-0.4
2,316,684	-		PP_2038	0.31	-1.7
2,316,772	+		PP_2038	0.37	+3.2
2,316,817	+		PP_2038	0.40	+1.0
2,317,028	+		PP_2038	0.54	+0.9
2,317,028	+		PP_2038	0.54	-1.4
2,317,028	+		PP_2038	0.54	-0.5
2,317,028	+		PP_2038	0.54	-1.1
2,317,028	+		PP_2038	0.54	+1.8
2,317,029	-		PP_2038	0.54	+3.2
2,317,029	-		PP_2038	0.54	-1.7
2,317,029	-		PP_2038	0.54	-0.5
2,317,029	-		PP_2038	0.54	-0.5
2,317,029	-		PP_2038	0.54	-1.1
2,317,103	+		PP_2038	0.59	-2.0
2,317,205	+		PP_2038	0.65	-0.1
2,317,205	+		PP_2038	0.65	-0.8
2,317,205	+		PP_2038	0.65	-1.0
2,317,353	-		PP_2038	0.75	-0.3
2,317,355	+		PP_2038	0.75	-0.1
2,317,355	+		PP_2038	0.75	-2.7
2,317,356	-		PP_2038	0.75	-0.2
2,317,394	+		PP_2038	0.77	-0.7
2,317,394	+		PP_2038	0.77	-0.6
2,317,395	-		PP_2038	0.77	-4.0
2,317,395	-		PP_2038	0.77	+1.2
2,317,451	+		PP_2038	0.81	-2.5
2,317,479	-		PP_2038	0.83	-1.1
2,317,479	-		PP_2038	0.83	-0.4
2,317,716	-				+0.3
2,317,739	-				-0.9
2,317,762	+				-1.3
2,317,762	+				-0.7
2,317,763	-				-0.8
2,317,895	+		PP_2039	0.12	+0.9
2,317,896	-		PP_2039	0.12	-0.9
2,317,896	-		PP_2039	0.12	+0.9
2,317,950	-		PP_2039	0.16	-1.1
2,318,221	+		PP_2039	0.40	-0.5
2,318,221	+		PP_2039	0.40	+1.7
2,318,221	+		PP_2039	0.40	+0.3
2,318,221	+		PP_2039	0.40	+1.5
2,318,222	-		PP_2039	0.40	+1.3
2,318,222	-		PP_2039	0.40	+1.6
2,318,222	-		PP_2039	0.40	+0.9
2,318,222	-				+2.5
2,318,222	-		PP_2039	0.40	-1.3
2,318,245	+		PP_2039	0.42	+1.3
2,318,246	-		PP_2039	0.42	-1.4
2,318,246	-		PP_2039	0.42	+0.6
2,318,490	+		PP_2039	0.63	+1.9
2,318,491	-		PP_2039	0.63	-2.0
2,318,566	+		PP_2039	0.69	+0.1
2,318,566	+		PP_2039	0.69	+1.6
2,318,567	-		PP_2039	0.69	-0.4
2,318,599	-		PP_2039	0.72	-2.7
2,318,625	+		PP_2039	0.74	+1.5
2,318,625	+		PP_2039	0.74	-0.7
2,318,626	-		PP_2039	0.74	+1.0
2,318,626	-		PP_2039	0.74	-1.7
2,318,626	-		PP_2039	0.74	+0.5
2,318,675	-		PP_2039	0.78	-0.2
2,318,675	-		PP_2039	0.78	+2.8
2,318,709	+		PP_2039	0.81	-0.8