Strain Fitness in Pseudomonas putida KT2440 around PP_2037

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,314,410	-		PP_2036	0.19	+0.6
2,314,447	+		PP_2036	0.24	+0.0
2,314,448	-		PP_2036	0.24	+0.5
2,314,559	+		PP_2036	0.36	-0.9
2,314,716	-		PP_2036	0.54	+0.8
2,314,757	+		PP_2036	0.59	+3.5
2,314,757	+		PP_2036	0.59	+1.2
2,314,758	-		PP_2036	0.59	+0.7
2,314,758	-		PP_2036	0.59	+0.6
2,314,758	-		PP_2036	0.59	+0.6
2,314,822	-		PP_2036	0.66	+0.7
2,314,964	+		PP_2036	0.82	-2.3
2,314,965	-		PP_2036	0.82	-0.5
2,314,965	-		PP_2036	0.82	+0.9
2,315,025	+		PP_2036	0.89	+0.4
2,315,025	+		PP_2036	0.89	-0.1
2,315,118	+				+0.9
2,315,119	-				-1.3
2,315,158	+				-1.4
2,315,159	-				+0.3
2,315,212	+				+2.9
2,315,213	-				+1.9
2,315,215	+				-0.3
2,315,216	-				+0.9
2,315,755	+		PP_2037	0.75	+0.4
2,315,755	+		PP_2037	0.75	+0.9
2,315,756	-		PP_2037	0.75	-0.3
2,315,756	-		PP_2037	0.75	-1.1
2,315,758	+		PP_2037	0.75	-1.8
2,315,758	+		PP_2037	0.75	-1.9
2,315,758	+		PP_2037	0.75	+0.3
2,315,758	+		PP_2037	0.75	-1.9
2,315,758	+		PP_2037	0.75	-0.4
2,315,759	-		PP_2037	0.75	+0.4
2,315,759	-		PP_2037	0.75	-0.5
2,315,759	-		PP_2037	0.75	-0.9
2,315,759	-		PP_2037	0.75	+0.4
2,315,759	-		PP_2037	0.75	-3.5
2,315,759	-		PP_2037	0.75	-1.1
2,315,832	-		PP_2037	0.85	-0.1
2,315,951	+				-0.4
2,315,952	-				+0.4
2,316,108	+				+1.6
2,316,109	-				+0.4
2,316,119	+				+1.1
2,316,119	+				+1.0
2,316,120	-				-1.4
2,316,131	-				-1.4
2,316,133	+				-0.5
2,316,133	+				-0.3
2,316,134	-				-1.1
2,316,134	-				-0.1
2,316,157	+				+0.3
2,316,175	-				-0.3
2,316,234	-				+3.5
2,316,234	-				-0.7
2,316,411	-		PP_2038	0.14	-1.1
2,316,605	+		PP_2038	0.26	-0.1
2,316,605	+		PP_2038	0.26	-2.8
2,316,605	+		PP_2038	0.26	+1.0
2,316,606	-		PP_2038	0.26	-0.3
2,316,606	-		PP_2038	0.26	+0.4
2,316,683	+		PP_2038	0.31	-1.4
2,316,683	+		PP_2038	0.31	-0.4
2,316,684	-		PP_2038	0.31	-1.7
2,316,772	+		PP_2038	0.37	+3.2
2,316,817	+		PP_2038	0.40	+1.0