Strain Fitness in Pseudomonas putida KT2440 around PP_1884

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,115,351	+		PP_1883	0.48	+2.5
2,115,351	+		PP_1883	0.48	-2.4
2,115,351	+		PP_1883	0.48	+1.7
2,115,351	+		PP_1883	0.48	-0.9
2,115,352	-		PP_1883	0.48	-0.8
2,115,352	-		PP_1883	0.48	+0.5
2,115,489	+		PP_1883	0.56	-1.4
2,115,489	+		PP_1883	0.56	+0.8
2,115,558	+		PP_1883	0.60	+2.5
2,115,559	-		PP_1883	0.60	-0.2
2,115,568	+		PP_1883	0.60	-1.3
2,115,612	+		PP_1883	0.63	+0.5
2,115,612	+		PP_1883	0.63	-1.7
2,115,843	+		PP_1883	0.75	+0.9
2,115,843	+		PP_1883	0.75	+0.9
2,115,844	-		PP_1883	0.75	-2.1
2,115,844	-		PP_1883	0.75	+1.7
2,115,846	+		PP_1883	0.76	+1.1
2,115,846	+		PP_1883	0.76	+1.5
2,115,846	+		PP_1883	0.76	-2.6
2,115,847	-		PP_1883	0.76	-0.3
2,115,928	-		PP_1883	0.80	+0.8
2,116,094	+		PP_1883	0.89	-0.1
2,116,125	+				+0.9
2,116,125	+				-2.3
2,116,126	-				-0.7
2,116,134	+				-1.1
2,116,325	-				-1.9
2,116,394	-				+1.9
2,116,431	+				-0.2
2,116,445	+				+0.9
2,116,446	-				+1.0
2,116,448	-				-0.1
2,116,448	-				+2.3
2,116,449	+				-0.2
2,116,484	-				+1.1
2,116,484	-				-1.5
2,116,611	+				-0.7
2,116,612	-		PP_1884	0.12	-0.1
2,116,658	+		PP_1884	0.14	+2.3
2,116,681	-		PP_1884	0.14	+2.5
2,116,739	+		PP_1884	0.17	-0.7
2,116,739	+		PP_1884	0.17	+1.5
2,116,739	+		PP_1884	0.17	+0.8
2,116,740	-		PP_1884	0.17	-2.6
2,116,794	+		PP_1884	0.19	-2.6
2,116,795	-		PP_1884	0.19	-0.3
2,116,961	-		PP_1884	0.26	+1.5
2,117,081	+		PP_1884	0.31	+1.2
2,117,087	+		PP_1884	0.31	+3.2
2,117,087	+		PP_1884	0.31	-1.1
2,117,088	-		PP_1884	0.31	-2.0
2,117,298	-		PP_1884	0.39	+0.0
2,117,298	-		PP_1884	0.39	+0.9
2,117,336	+		PP_1884	0.41	+2.5
2,117,432	-				+1.5
2,117,432	-		PP_1884	0.45	-1.6
2,117,559	+		PP_1884	0.50	+1.5
2,117,560	-		PP_1884	0.50	+0.3
2,117,578	+		PP_1884	0.51	-1.3
2,117,579	-		PP_1884	0.51	+2.5
2,117,599	+		PP_1884	0.52	+2.6
2,117,691	+		PP_1884	0.55	-0.9
2,117,691	+		PP_1884	0.55	+4.3
2,117,692	-		PP_1884	0.55	-0.6
2,117,801	+		PP_1884	0.60	+0.1
2,117,801	+		PP_1884	0.60	-3.0
2,117,801	+		PP_1884	0.60	+0.3
2,117,801	+		PP_1884	0.60	-0.5
2,117,802	-		PP_1884	0.60	+0.0
2,117,802	-		PP_1884	0.60	+4.1
2,117,802	-		PP_1884	0.60	+0.3
2,117,802	-		PP_1884	0.60	-0.1
2,118,003	+		PP_1884	0.68	+0.8
2,118,003	+		PP_1884	0.68	-2.4
2,118,004	-		PP_1884	0.68	+1.3
2,118,347	+		PP_1884	0.82	+0.9
2,118,347	+		PP_1884	0.82	-1.4
2,118,347	+		PP_1884	0.82	+0.6
2,118,347	+		PP_1884	0.82	-3.2
2,118,347	+		PP_1884	0.82	+3.2
2,118,347	+		PP_1884	0.82	+1.9
2,118,348	-		PP_1884	0.82	+0.8
2,118,348	-		PP_1884	0.82	+4.5
2,118,349	+		PP_1884	0.82	+0.9
2,118,349	+		PP_1884	0.82	+0.9
2,118,611	+				-0.1
2,118,611	+				+0.9
2,118,612	-				+0.1
2,118,612	-				-2.3
2,118,614	+				-2.8
2,118,614	+				+0.1
2,118,615	-				-2.2
2,118,615	-				-2.8
2,118,615	-				+5.1
2,118,684	+				+0.7
2,118,685	-				-3.8
2,118,685	-				-0.7
2,118,685	-				+0.9
2,118,746	+				-1.1
2,118,747	-				+0.1
2,118,788	+				+0.5
2,118,807	+				-0.3
2,118,855	+				+0.9
2,118,856	-				-0.5
2,118,862	+				+0.3
2,118,862	+				+2.6
2,118,862	+				-1.2
2,118,863	-				-1.7
2,118,894	+				+0.9
2,118,894	+				+1.2
2,119,086	+		PP_1885	0.10	-0.9
2,119,100	-		PP_1885	0.11	-1.1
2,119,381	+		PP_1885	0.23	+2.5
2,119,382	-		PP_1885	0.23	+3.7
2,119,382	-		PP_1885	0.23	-0.5
2,119,382	-		PP_1885	0.23	+1.9
2,119,420	+		PP_1885	0.24	+0.9
2,119,421	-		PP_1885	0.24	-2.3
2,119,445	+		PP_1885	0.25	-0.4
2,119,445	+		PP_1885	0.25	-0.1
2,119,445	+		PP_1885	0.25	+1.1
2,119,446	-		PP_1885	0.25	-2.9
2,119,446	-		PP_1885	0.25	-0.5
2,119,630	+		PP_1885	0.33	-0.2
2,119,631	-		PP_1885	0.33	-0.1
2,119,695	+		PP_1885	0.36	-1.3
2,119,738	+		PP_1885	0.38	+4.3
2,119,750	+		PP_1885	0.38	+1.6
2,119,750	+		PP_1885	0.38	+0.9
2,119,750	+		PP_1885	0.38	+1.9
2,119,750	+		PP_1885	0.38	-0.3
2,119,750	+		PP_1885	0.38	+0.4
2,119,751	-		PP_1885	0.38	-2.6
2,119,765	+		PP_1885	0.39	+0.3
2,119,765	+		PP_1885	0.39	+2.5
2,119,766	-		PP_1885	0.39	-0.1
2,119,766	-		PP_1885	0.39	+0.1
2,119,766	-		PP_1885	0.39	-1.2