Strain Fitness in Pseudomonas putida KT2440 around PP_1883

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,113,492	+		PP_1882	0.84	+0.6
2,113,492	+		PP_1882	0.84	-2.7
2,113,493	-		PP_1882	0.84	+1.3
2,113,493	-		PP_1882	0.84	+2.5
2,113,493	-		PP_1882	0.84	-2.1
2,113,495	+		PP_1882	0.84	+1.0
2,113,495	+		PP_1882	0.84	+3.2
2,113,495	+		PP_1882	0.84	+1.2
2,113,495	+		PP_1882	0.84	-1.4
2,113,496	-		PP_1882	0.84	+0.2
2,113,501	+		PP_1882	0.84	-0.5
2,113,501	+		PP_1882	0.84	+0.6
2,113,502	-		PP_1882	0.84	-1.3
2,113,502	-		PP_1882	0.84	+0.3
2,113,502	-		PP_1882	0.84	-1.2
2,113,502	-		PP_1882	0.84	+1.1
2,113,502	-		PP_1882	0.84	-0.9
2,113,565	-		PP_1882	0.85	+0.4
2,113,645	+		PP_1882	0.87	+0.5
2,113,771	+		PP_1882	0.89	+0.6
2,113,771	+		PP_1882	0.89	+1.9
2,113,771	+		PP_1882	0.89	+1.0
2,113,771	+		PP_1882	0.89	-1.5
2,113,771	+		PP_1882	0.89	+0.5
2,113,772	-		PP_1882	0.90	+0.4
2,113,772	-		PP_1882	0.90	-2.0
2,113,772	-		PP_1882	0.90	+3.5
2,113,772	-		PP_1882	0.90	+1.5
2,113,772	-		PP_1882	0.90	+0.6
2,113,792	+		PP_1882	0.90	+1.4
2,113,793	-		PP_1882	0.90	+0.3
2,113,825	+				-1.1
2,113,825	+				-0.1
2,113,825	+				-1.1
2,113,826	-				-2.1
2,113,826	-				+1.3
2,113,948	+				-3.2
2,114,033	-				-0.2
2,114,051	+				-0.8
2,114,051	+				+0.9
2,114,052	-				-0.2
2,114,112	-				+0.4
2,114,161	+				-1.3
2,114,285	+				-1.1
2,114,327	-				+0.9
2,114,428	+				+0.9
2,114,430	+				-0.1
2,114,478	+				+0.9
2,114,478	+				-3.5
2,114,478	+				-1.1
2,114,478	+				+2.5
2,114,479	-				+0.6
2,114,517	-				-0.4
2,114,602	+				-0.8
2,114,602	+				-3.1
2,114,602	+				-1.6
2,114,602	+				+4.1
2,114,602	+				-0.1
2,114,603	-				-2.8
2,114,603	-				+1.1
2,114,603	-				+4.3
2,114,604	+				-0.6
2,114,604	+				-1.2
2,114,604	+				-0.6
2,114,604	+				+0.6
2,114,605	-				-0.5
2,114,605	-				-0.9
2,114,605	-				-1.3
2,114,605	-				-2.0
2,114,605	-				-0.2
2,114,606	+				-2.3
2,114,606	+				+3.1
2,114,606	+				+1.9
2,114,607	-				-0.1
2,114,668	+		PP_1883	0.10	-0.6
2,114,669	-		PP_1883	0.10	+1.5
2,114,669	-		PP_1883	0.10	+0.9
2,114,748	+		PP_1883	0.15	-0.7
2,114,748	+		PP_1883	0.15	+1.7
2,114,749	-		PP_1883	0.15	+2.0
2,114,839	+		PP_1883	0.20	+1.6
2,114,839	+		PP_1883	0.20	+0.8
2,114,840	-		PP_1883	0.20	-1.1
2,114,917	+		PP_1883	0.24	-1.1
2,114,917	+		PP_1883	0.24	-2.3
2,114,917	+		PP_1883	0.24	+0.8
2,114,918	-		PP_1883	0.24	+0.0
2,114,918	-		PP_1883	0.24	-1.3
2,114,918	-		PP_1883	0.24	+0.6
2,114,918	-		PP_1883	0.24	+1.3
2,114,937	+		PP_1883	0.25	+1.7
2,114,938	-		PP_1883	0.25	-0.1
2,115,025	+		PP_1883	0.30	-3.3
2,115,026	-		PP_1883	0.30	-1.3
2,115,026	-		PP_1883	0.30	-0.7
2,115,026	-		PP_1883	0.30	+2.4
2,115,026	-		PP_1883	0.30	+0.5
2,115,026	-		PP_1883	0.30	-0.0
2,115,096	+		PP_1883	0.34	+0.7
2,115,097	-		PP_1883	0.34	-0.1
2,115,124	-		PP_1883	0.36	+4.7
2,115,133	-		PP_1883	0.36	-3.1
2,115,237	-		PP_1883	0.42	+1.5
2,115,282	+		PP_1883	0.44	-1.1
2,115,282	+		PP_1883	0.44	-1.7
2,115,351	+		PP_1883	0.48	+2.5
2,115,351	+		PP_1883	0.48	-2.4
2,115,351	+		PP_1883	0.48	+1.7
2,115,351	+		PP_1883	0.48	-0.9
2,115,352	-		PP_1883	0.48	-0.8
2,115,352	-		PP_1883	0.48	+0.5
2,115,489	+		PP_1883	0.56	-1.4
2,115,489	+		PP_1883	0.56	+0.8
2,115,558	+		PP_1883	0.60	+2.5
2,115,559	-		PP_1883	0.60	-0.2
2,115,568	+		PP_1883	0.60	-1.3
2,115,612	+		PP_1883	0.63	+0.5
2,115,612	+		PP_1883	0.63	-1.7
2,115,843	+		PP_1883	0.75	+0.9
2,115,843	+		PP_1883	0.75	+0.9
2,115,844	-		PP_1883	0.75	-2.1
2,115,844	-		PP_1883	0.75	+1.7
2,115,846	+		PP_1883	0.76	+1.1
2,115,846	+		PP_1883	0.76	+1.5
2,115,846	+		PP_1883	0.76	-2.6
2,115,847	-		PP_1883	0.76	-0.3
2,115,928	-		PP_1883	0.80	+0.8
2,116,094	+		PP_1883	0.89	-0.1
2,116,125	+				+0.9
2,116,125	+				-2.3
2,116,126	-				-0.7
2,116,134	+				-1.1
2,116,325	-				-1.9
2,116,394	-				+1.9
2,116,431	+				-0.2
2,116,445	+				+0.9
2,116,446	-				+1.0
2,116,448	-				-0.1
2,116,448	-				+2.3
2,116,449	+				-0.2
2,116,484	-				+1.1
2,116,484	-				-1.5
2,116,611	+				-0.7
2,116,612	-		PP_1884	0.12	-0.1
2,116,658	+		PP_1884	0.14	+2.3
2,116,681	-		PP_1884	0.14	+2.5
2,116,739	+		PP_1884	0.17	-0.7
2,116,739	+		PP_1884	0.17	+1.5
2,116,739	+		PP_1884	0.17	+0.8
2,116,740	-		PP_1884	0.17	-2.6
2,116,794	+		PP_1884	0.19	-2.6
2,116,795	-		PP_1884	0.19	-0.3
2,116,961	-		PP_1884	0.26	+1.5
2,117,081	+		PP_1884	0.31	+1.2
2,117,087	+		PP_1884	0.31	+3.2
2,117,087	+		PP_1884	0.31	-1.1
2,117,088	-		PP_1884	0.31	-2.0