Strain Fitness in Pseudomonas putida KT2440 around PP_1850

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
2,073,272	-				+0.9
2,073,286	+				+0.2
2,073,287	-				+1.6
2,073,438	+				-1.7
2,073,468	+				-2.5
2,073,468	+				+0.9
2,073,469	-				-1.0
2,073,469	-				+0.6
2,073,469	-				+0.7
2,073,483	+				-0.7
2,073,483	+				-0.8
2,073,483	+				-0.9
2,073,483	+				-1.0
2,073,483	+				-0.1
2,073,484	-				+0.4
2,073,484	-				-0.5
2,073,562	+				-2.1
2,073,563	-				-0.9
2,073,563	-				+1.0
2,073,580	+				+0.1
2,073,580	+				-0.7
2,073,581	-				-2.1
2,073,601	+				-0.1
2,073,601	+				-0.6
2,073,602	-				+0.3
2,073,602	-				+0.9
2,073,602	-				-0.1
2,073,988	+				+0.5
2,073,988	+				+1.9
2,073,989	-				-3.6
2,074,075	+				-3.4
2,074,143	+				-1.2
2,074,143	+				-0.3
2,074,143	+				+2.1
2,074,143	+				+0.9
2,074,143	+				+2.9
2,074,144	-				+1.4
2,074,190	-				+0.7
2,074,221	-				-0.2
2,074,351	+		PP_1850	0.13	-1.4
2,074,351	+		PP_1850	0.13	+1.6
2,074,352	-		PP_1850	0.14	-1.9
2,074,352	-		PP_1850	0.14	-1.5
2,074,361	+		PP_1850	0.14	-4.4
2,074,361	+		PP_1850	0.14	-0.2
2,074,361	+		PP_1850	0.14	+1.1
2,074,361	+		PP_1850	0.14	+1.4
2,074,361	+		PP_1850	0.14	-1.9
2,074,361	+		PP_1850	0.14	+0.9
2,074,361	+		PP_1850	0.14	+0.9
2,074,361	-		PP_1850	0.14	-1.0
2,074,362	-		PP_1850	0.14	-3.4
2,074,362	-		PP_1850	0.14	-0.9
2,074,362	-		PP_1850	0.14	+0.1
2,074,362	-		PP_1850	0.14	+1.4
2,074,798	+		PP_1850	0.51	-0.1
2,074,799	-		PP_1850	0.51	+0.1
2,074,842	+		PP_1850	0.55	-2.3
2,074,856	+		PP_1850	0.56	+0.9
2,074,885	+		PP_1850	0.58	+1.9
2,074,885	+		PP_1850	0.58	-0.7
2,074,885	+		PP_1850	0.58	-3.6
2,074,885	+		PP_1850	0.58	+1.4
2,074,885	+		PP_1850	0.58	-0.7
2,074,886	-		PP_1850	0.59	+1.4
2,074,886	-		PP_1850	0.59	+0.1
2,074,886	-		PP_1850	0.59	+0.8
2,074,886	-		PP_1850	0.59	+1.0
2,074,886	-		PP_1850	0.59	-0.8
2,074,889	+		PP_1850	0.59	+1.3
2,074,890	-		PP_1850	0.59	+1.1
2,074,890	-		PP_1850	0.59	+0.5
2,074,890	-		PP_1850	0.59	+0.6
2,074,931	+		PP_1850	0.62	-0.0
2,074,932	-		PP_1850	0.62	-1.6
2,074,932	-		PP_1850	0.62	+1.5
2,075,147	+		PP_1850	0.80	+0.8
2,075,147	+		PP_1850	0.80	+2.0
2,075,209	+		PP_1850	0.86	-0.0
2,075,299	+				-2.2
2,075,300	-				-2.3
2,075,302	+				+0.5
2,075,303	-				-1.2
2,075,303	-				+0.9
2,075,405	+				+0.9
2,075,422	-				+0.3
2,075,507	-				+0.6
2,075,581	-		PP_5479	0.11	-0.2
2,075,581	-		PP_5479	0.11	+0.2
2,075,648	+		PP_5479	0.19	+1.1
2,075,891	+		PP_5479	0.46	-0.7
2,075,942	+		PP_5479	0.52	+0.6
2,075,942	+		PP_5479	0.52	-0.1
2,075,942	+		PP_5479	0.52	-0.4
2,075,943	-		PP_5479	0.52	+0.7
2,076,242	+		PP_5479	0.86	+2.1
2,076,283	+				-1.0
2,076,284	-				-1.4
2,076,284	-				-0.4
2,076,284	-				-2.9
2,076,284	-				-0.6
2,076,284	-				+1.3
2,076,361	+				-0.6
2,076,362	-				+0.6
2,076,362	-				-1.9
2,076,362	-				-0.8
2,076,362	-				-1.3
2,076,367	+				-1.4