Strain Fitness in Pseudomonas putida KT2440 around PP_1567

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
1,759,861	+		PP_1565	0.79	+0.7
1,759,862	-		PP_1565	0.79	-1.1
1,759,862	-		PP_1565	0.79	-0.6
1,759,899	+		PP_1565	0.82	+1.5
1,759,900	-		PP_1565	0.82	+3.8
1,759,921	+		PP_1565	0.84	-1.8
1,759,921	+		PP_1565	0.84	-1.8
1,759,921	+		PP_1565	0.84	-0.2
1,759,921	+		PP_1565	0.84	-1.2
1,759,921	+		PP_1565	0.84	-1.4
1,759,921	+		PP_1565	0.84	-3.4
1,759,921	+		PP_1565	0.84	+2.4
1,759,922	-		PP_1565	0.84	+0.5
1,759,922	-		PP_1565	0.84	+0.6
1,759,922	-		PP_1565	0.84	+0.3
1,759,944	+		PP_1565	0.85	+0.7
1,759,945	-		PP_1565	0.85	-2.0
1,759,945	-		PP_1565	0.85	+0.2
1,759,945	-		PP_1565	0.85	-1.8
1,759,945	-		PP_1565	0.85	-0.9
1,759,948	+		PP_1565	0.86	-0.1
1,759,949	-		PP_1565	0.86	-1.0
1,760,121	+				+0.5
1,760,121	+				+0.6
1,760,121	+				+1.6
1,760,121	+				-2.1
1,760,121	+				+1.3
1,760,122	-				-0.2
1,760,122	-				+4.0
1,760,122	-				-2.9
1,760,163	+				+1.4
1,760,164	-				-0.4
1,760,164	-				-0.5
1,760,250	+		PP_1566	0.17	-0.8
1,760,251	-		PP_1566	0.17	+0.1
1,760,500	-		PP_1566	0.53	-0.4
1,760,502	+		PP_1566	0.53	+1.2
1,760,502	+		PP_1566	0.53	+0.6
1,760,502	+		PP_1566	0.53	-2.6
1,760,502	+		PP_1566	0.53	-3.4
1,760,503	-		PP_1566	0.53	-1.9
1,760,503	-		PP_1566	0.53	+0.8
1,760,847	-				+4.0
1,761,242	+		PP_1567	0.31	+1.1
1,761,251	+		PP_1567	0.32	-2.5
1,761,277	+		PP_1567	0.34	-1.8
1,761,479	+		PP_1567	0.50	+3.6
1,761,479	+		PP_1567	0.50	+0.7
1,761,555	+		PP_1567	0.56	+0.3
1,761,555	+		PP_1567	0.56	-0.3
1,761,555	+		PP_1567	0.56	-1.6
1,761,576	+		PP_1567	0.58	-2.6
1,761,588	+		PP_1567	0.59	-1.2
1,761,588	+		PP_1567	0.59	-0.7
1,761,588	+		PP_1567	0.59	-1.1
1,761,588	+		PP_1567	0.59	-1.5
1,761,707	+		PP_1567	0.69	-2.6
1,761,707	+		PP_1567	0.69	-1.7
1,761,747	+		PP_1567	0.72	+0.8
1,761,822	+		PP_1567	0.78	+0.8
1,761,822	+		PP_1567	0.78	-2.3
1,761,822	+		PP_1567	0.78	-1.7
1,761,823	-		PP_1567	0.78	-1.7
1,761,823	-		PP_1567	0.78	-1.4
1,761,854	-		PP_1567	0.80	-2.2
1,762,139	-				+0.6
1,762,191	-		PP_1568	0.23	+1.1
1,762,366	+				-0.5
1,762,366	+				+0.4
1,762,366	+				-1.0
1,762,366	+				-0.4
1,762,367	-				+0.8
1,762,367	-				-1.1
1,762,367	-				+0.1
1,762,367	-				-0.8
1,762,551	+		PP_1569	0.39	+0.8
1,762,658	+		PP_1569	0.61	-2.1
1,762,658	+		PP_1569	0.61	+0.6
1,762,659	-		PP_1569	0.61	+0.3
1,762,683	-		PP_1569	0.66	-1.2
1,762,696	+		PP_1569	0.69	-0.6
1,762,696	+		PP_1569	0.69	-1.5
1,763,057	+		PP_1570	0.63	-1.1
1,763,058	-		PP_1570	0.63	-0.9
1,763,095	+		PP_1570	0.74	+0.4
1,763,095	+		PP_1570	0.74	-0.5
1,763,096	-		PP_1570	0.74	-1.0
1,763,096	-		PP_1570	0.74	+0.9