Strain Fitness in Pseudomonas putida KT2440 around PP_1500

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
1,704,979	-		PP_1499	0.26	+0.5
1,705,120	-		PP_1499	0.36	+2.4
1,705,239	-		PP_1499	0.45	-4.3
1,705,296	+		PP_1499	0.50	-0.4
1,705,296	+		PP_1499	0.50	+1.2
1,705,296	+		PP_1499	0.50	-0.9
1,705,297	-		PP_1499	0.50	+0.6
1,705,297	-		PP_1499	0.50	+1.8
1,705,412	+		PP_1499	0.58	-2.0
1,705,497	+		PP_1499	0.65	-0.5
1,705,620	+		PP_1499	0.74	+0.7
1,705,620	+		PP_1499	0.74	-1.4
1,705,620	+		PP_1499	0.74	+0.8
1,705,621	-		PP_1499	0.74	-0.8
1,705,714	-		PP_1499	0.81	-0.2
1,705,719	+		PP_1499	0.81	+0.5
1,705,719	+		PP_1499	0.81	-0.8
1,705,720	-		PP_1499	0.82	+0.3
1,705,720	-		PP_1499	0.82	+3.1
1,705,848	+				-0.2
1,705,848	+				+1.6
1,705,849	-				-1.5
1,706,032	+		PP_1500	0.10	-2.3
1,706,032	+		PP_1500	0.10	+1.6
1,706,224	+		PP_1500	0.31	-0.4
1,706,224	+		PP_1500	0.31	-0.8
1,706,224	+		PP_1500	0.31	-2.1
1,706,224	+		PP_1500	0.31	-1.6
1,706,224	+		PP_1500	0.31	-0.3
1,706,224	+		PP_1500	0.31	-1.3
1,706,225	-		PP_1500	0.31	-0.1
1,706,246	-		PP_1500	0.34	-1.3
1,706,267	-		PP_1500	0.36	-0.3
1,706,275	+		PP_1500	0.37	-0.9
1,706,315	-		PP_1500	0.41	-1.0
1,706,381	+		PP_1500	0.48	+1.2
1,706,381	+		PP_1500	0.48	-2.6
1,706,382	-		PP_1500	0.48	-0.4
1,706,422	+		PP_1500	0.53	+0.6
1,706,423	-		PP_1500	0.53	-2.2
1,706,491	+		PP_1500	0.60	-0.3
1,706,680	+		PP_1500	0.81	-2.5
1,706,680	+		PP_1500	0.81	+0.8
1,706,680	+		PP_1500	0.81	-1.2
1,706,681	-		PP_1500	0.81	+0.5
1,706,751	+		PP_1500	0.88	+0.8
1,706,751	+		PP_1500	0.88	-2.1
1,706,751	+		PP_1500	0.88	-0.1
1,706,751	+		PP_1500	0.88	+2.1
1,706,752	-		PP_1500	0.88	-0.1
1,706,934	+		PP_1501	0.24	-1.5
1,706,935	-		PP_1501	0.24	-1.8
1,706,937	+		PP_1501	0.25	-1.0
1,706,937	+		PP_1501	0.25	-0.7
1,706,937	+		PP_1501	0.25	+1.8
1,706,938	-		PP_1501	0.25	-0.8
1,707,022	-		PP_1501	0.51	-0.8
1,707,022	-		PP_1501	0.51	-1.7
1,707,022	-		PP_1501	0.51	+1.8
1,707,022	-		PP_1501	0.51	+1.5
1,707,028	+		PP_1501	0.53	+0.2
1,707,547	+		PP_1502	0.28	+1.2
1,707,547	+		PP_1502	0.28	-2.3
1,707,548	-		PP_1502	0.28	-0.7
1,707,548	-		PP_1502	0.28	-0.8
1,707,574	+		PP_1502	0.32	+0.8
1,707,574	+		PP_1502	0.32	-0.8
1,707,574	+		PP_1502	0.32	-1.3
1,707,574	+		PP_1502	0.32	+1.8
1,707,656	+		PP_1502	0.42	+0.8
1,707,828	-		PP_1502	0.64	-1.2
1,707,828	-		PP_1502	0.64	-2.3