Strain Fitness in Pseudomonas putida KT2440 around PP_1445

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
1,646,428	+		PP_1444	0.61	-2.1
1,646,524	+		PP_1444	0.65	-0.5
1,646,525	-		PP_1444	0.66	+2.4
1,646,525	-		PP_1444	0.66	+1.9
1,646,527	+		PP_1444	0.66	-1.5
1,646,527	+		PP_1444	0.66	+1.1
1,646,528	-		PP_1444	0.66	-2.1
1,646,599	+		PP_1444	0.69	-2.3
1,646,665	+		PP_1444	0.71	-1.2
1,646,810	-		PP_1444	0.77	-0.1
1,647,105	+		PP_1444	0.90	-0.3
1,647,106	-		PP_1444	0.90	+2.2
1,647,151	+				-0.2
1,647,226	+				+0.7
1,647,226	+				-0.1
1,647,227	-				-1.4
1,647,227	-				-1.3
1,647,227	-				-0.1
1,647,229	+				-0.4
1,647,229	+				-0.7
1,647,229	+				-3.4
1,647,230	-				-0.1
1,647,230	-				-2.7
1,647,230	-				-3.6
1,647,359	+				+0.9
1,647,359	+				+0.9
1,647,359	+				+0.6
1,647,359	+				-2.1
1,647,359	+				-2.3
1,647,360	-				-1.4
1,647,360	-				-0.5
1,647,360	-				+0.0
1,647,463	+				+0.9
1,647,464	-				+2.2
1,647,464	-				+2.4
1,647,514	+				+1.9
1,647,514	+				-0.1
1,647,530	-		PP_1445	0.11	+4.6
1,647,569	-		PP_1445	0.14	+2.1
1,647,569	-		PP_1445	0.14	+0.9
1,647,574	+		PP_1445	0.14	-0.6
1,647,575	-		PP_1445	0.14	+1.9
1,647,575	-		PP_1445	0.14	+1.1
1,647,712	+		PP_1445	0.24	-2.0
1,647,712	+		PP_1445	0.24	+0.2
1,647,712	+		PP_1445	0.24	+1.0
1,647,713	-		PP_1445	0.24	+1.5
1,647,713	-		PP_1445	0.24	+1.1
1,647,713	-		PP_1445	0.24	+1.0
1,647,713	-		PP_1445	0.24	+0.5
1,647,713	-		PP_1445	0.24	+2.9
1,647,920	+		PP_1445	0.40	+0.8
1,647,921	-		PP_1445	0.40	+1.0
1,647,921	-		PP_1445	0.40	+1.6
1,647,921	-		PP_1445	0.40	+0.6
1,647,925	+		PP_1445	0.40	+2.4
1,647,926	-		PP_1445	0.40	+0.3
1,647,928	+		PP_1445	0.41	-1.7
1,647,928	+		PP_1445	0.41	-2.0
1,647,928	+		PP_1445	0.41	-3.2
1,647,929	-		PP_1445	0.41	+0.5
1,647,929	-		PP_1445	0.41	+3.5
1,647,929	-		PP_1445	0.41	+1.3
1,647,929	-		PP_1445	0.41	+1.5
1,647,931	+		PP_1445	0.41	-1.6
1,647,931	+		PP_1445	0.41	+0.0
1,647,944	-		PP_1445	0.42	+3.3
1,647,965	+		PP_1445	0.43	-1.1
1,647,966	-		PP_1445	0.43	+2.3
1,647,966	-		PP_1445	0.43	+0.9
1,647,966	-		PP_1445	0.43	+1.4
1,647,966	-		PP_1445	0.43	+0.6
1,647,978	+		PP_1445	0.44	+0.8
1,647,978	+		PP_1445	0.44	-0.8
1,648,087	+		PP_1445	0.52	-0.8
1,648,087	+		PP_1445	0.52	-3.7
1,648,088	-		PP_1445	0.53	+2.4
1,648,101	-		PP_1445	0.53	+1.4
1,648,108	+		PP_1445	0.54	+0.4
1,648,108	+		PP_1445	0.54	-0.9
1,648,108	+		PP_1445	0.54	-1.1
1,648,109	-		PP_1445	0.54	+1.0
1,648,280	-		PP_1445	0.67	+0.4
1,648,496	-		PP_1445	0.83	+1.9
1,648,574	-		PP_1445	0.89	+0.3
1,648,696	+				-0.6
1,648,696	+				+2.4
1,648,727	-				+1.5
1,648,790	+				+0.9
1,648,790	+				+0.1
1,648,791	-				+1.9
1,648,840	+				-1.5
1,648,841	-				+0.3
1,648,841	-				+0.5
1,648,842	+				+0.8
1,648,842	+				-1.2
1,648,842	+				+0.6
1,648,843	-				-1.7
1,648,843	-				+1.7
1,648,852	+				-0.8
1,648,852	+				+0.3
1,648,912	-				+0.3
1,648,912	-				+0.3
1,648,912	-				+0.7
1,648,927	-				+0.9
1,648,963	-				-1.0
1,648,970	+				-2.3
1,648,971	-				-4.0
1,648,992	+				-0.8
1,649,028	+				+0.4
1,649,028	+				-0.4
1,649,029	-				+0.3
1,649,049	+				-1.3
1,649,094	-				+2.3
1,649,196	-				-1.0
1,649,196	-				-3.7
1,649,258	-		PP_1446	0.12	-0.7
1,649,361	+		PP_1446	0.17	-0.2
1,649,362	-		PP_1446	0.17	+0.6
1,649,363	+		PP_1446	0.17	-0.7
1,649,363	+		PP_1446	0.17	-0.8
1,649,364	-		PP_1446	0.17	+1.0
1,649,570	+		PP_1446	0.27	-2.0
1,649,588	+		PP_1446	0.28	+1.8
1,649,705	-		PP_1446	0.34	-3.3