Strain Fitness in Pseudomonas putida KT2440 around PP_1283

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
1,464,696	-		PP_1282	0.36	-1.0
1,464,761	+		PP_1282	0.40	-0.9
1,464,761	+		PP_1282	0.40	+1.2
1,464,761	+		PP_1282	0.40	+0.8
1,464,762	-		PP_1282	0.41	-0.4
1,464,762	-		PP_1282	0.41	+4.0
1,464,762	-		PP_1282	0.41	-0.9
1,464,762	-		PP_1282	0.41	-0.5
1,464,762	-		PP_1282	0.41	+0.1
1,464,789	-		PP_1282	0.42	-0.4
1,464,902	+		PP_1282	0.50	-0.4
1,464,902	+		PP_1282	0.50	+0.8
1,464,902	+		PP_1282	0.50	-0.3
1,464,903	-		PP_1282	0.50	-1.5
1,464,914	+		PP_1282	0.51	-0.5
1,465,103	+		PP_1282	0.64	-1.6
1,465,172	+		PP_1282	0.69	-3.1
1,465,208	+		PP_1282	0.72	-0.6
1,465,296	-		PP_1282	0.78	+0.6
1,465,469	+		PP_1282	0.90	-0.7
1,465,469	+		PP_1282	0.90	-0.4
1,465,785	+				+1.8
1,465,786	-				-1.3
1,465,786	-				+0.8
1,465,935	+		PP_1283	0.19	+0.0
1,465,935	+		PP_1283	0.19	-0.3
1,465,937	+		PP_1283	0.20	+0.7
1,465,937	+		PP_1283	0.20	+0.0
1,465,938	-		PP_1283	0.20	+0.1
1,465,938	-		PP_1283	0.20	+0.8
1,465,938	-		PP_1283	0.20	+3.2
1,466,067	+		PP_1283	0.28	+0.7
1,466,097	+		PP_1283	0.30	-0.2
1,466,098	-		PP_1283	0.30	-0.5
1,466,109	+		PP_1283	0.31	+3.2
1,466,109	+		PP_1283	0.31	+0.5
1,466,110	-		PP_1283	0.31	-1.9
1,466,169	+		PP_1283	0.34	-0.7
1,466,169	+		PP_1283	0.34	+0.8
1,466,170	-		PP_1283	0.35	-1.1
1,466,244	+		PP_1283	0.39	+1.3
1,466,245	-		PP_1283	0.39	-2.2
1,466,323	+		PP_1283	0.44	-0.1
1,466,323	+		PP_1283	0.44	-1.7
1,466,323	+		PP_1283	0.44	+1.0
1,466,324	-		PP_1283	0.44	+1.0
1,466,324	-		PP_1283	0.44	+4.3
1,466,361	+		PP_1283	0.47	+0.3
1,466,361	+		PP_1283	0.47	-0.7
1,466,362	-		PP_1283	0.47	+0.4
1,466,473	-		PP_1283	0.54	+1.7
1,466,473	-		PP_1283	0.54	-0.9
1,466,473	-		PP_1283	0.54	+0.4
1,466,512	+		PP_1283	0.56	-0.0
1,466,512	+		PP_1283	0.56	-0.2
1,466,513	-		PP_1283	0.57	-0.2
1,466,523	+		PP_1283	0.57	+3.1
1,466,757	+		PP_1283	0.72	+3.3
1,466,757	+		PP_1283	0.72	+0.7
1,466,757	+		PP_1283	0.72	+3.2
1,466,785	-		PP_1283	0.74	+3.0
1,466,935	+		PP_1283	0.84	-1.7
1,466,936	-		PP_1283	0.84	+0.2
1,466,936	-		PP_1283	0.84	+0.2
1,467,067	+				-4.2
1,467,067	+				+0.3
1,467,068	-				-2.2
1,467,069	+				+0.8
1,467,069	+				+0.0
1,467,069	+				+0.8
1,467,070	-				+1.3
1,467,170	+				+1.2
1,467,170	+				+0.8
1,467,253	+				+0.8
1,467,294	+				+1.8
1,467,295	-				-2.5
1,467,376	+		PP_1284	0.11	+0.8
1,467,377	-		PP_1284	0.11	-0.7
1,467,377	-		PP_1284	0.11	-0.7
1,467,377	-		PP_1284	0.11	+3.0
1,467,377	-		PP_1284	0.11	+0.8
1,467,520	+		PP_1284	0.21	+1.1
1,467,539	-		PP_1284	0.22	-0.7
1,467,959	+		PP_1284	0.50	+0.7
1,467,959	+		PP_1284	0.50	-0.9
1,468,094	-		PP_1284	0.60	+0.6
1,468,094	-		PP_1284	0.60	-1.7
1,468,094	-		PP_1284	0.60	+1.4
1,468,147	+		PP_1284	0.63	-2.0
1,468,148	-		PP_1284	0.63	+0.8