Strain Fitness in Pseudomonas putida KT2440 around PP_1227

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
1,401,598	+				+0.0
1,401,599	-				+1.9
1,401,666	+				-2.5
1,401,666	+				+0.2
1,401,666	+				+3.5
1,401,666	+				-0.6
1,401,666	+				+0.9
1,401,667	-				+2.5
1,401,667	-				+1.6
1,401,690	+				+0.9
1,401,691	-				-0.9
1,401,691	-				+0.9
1,401,761	+		PP_1226	0.13	+0.4
1,401,950	+		PP_1226	0.41	-2.1
1,401,950	+		PP_1226	0.41	+3.3
1,401,950	+		PP_1226	0.41	-0.2
1,401,950	+		PP_1226	0.41	-0.1
1,401,951	-		PP_1226	0.41	+0.9
1,401,951	-		PP_1226	0.41	+2.0
1,402,005	+		PP_1226	0.49	+1.9
1,402,050	-		PP_1226	0.56	+2.9
1,402,128	+		PP_1226	0.68	+1.6
1,402,128	+		PP_1226	0.68	+0.9
1,402,129	-		PP_1226	0.68	-0.9
1,402,129	-		PP_1226	0.68	+0.9
1,402,217	+		PP_1226	0.81	+0.9
1,402,238	+		PP_1226	0.84	-0.7
1,402,338	-				+3.4
1,402,414	-		PP_t13	0.11	-1.5
1,402,426	-		PP_t13	0.26	-0.1
1,402,442	-		PP_t13	0.47	+1.4
1,402,468	+		PP_t13	0.82	-0.1
1,402,489	+				-2.3
1,402,490	-				+3.4
1,402,576	+				-0.1
1,402,759	+		PP_1227	0.19	-1.5
1,402,760	-		PP_1227	0.19	-0.8
1,402,769	-		PP_1227	0.20	-3.4
1,402,815	+		PP_1227	0.25	-1.2
1,402,815	+		PP_1227	0.25	-1.7
1,402,815	+		PP_1227	0.25	-1.2
1,402,816	-		PP_1227	0.25	-0.7
1,402,816	-		PP_1227	0.25	+0.3
1,402,934	+		PP_1227	0.37	-1.0
1,402,936	+		PP_1227	0.38	-3.6
1,402,936	+		PP_1227	0.38	-1.7
1,402,936	+		PP_1227	0.38	+0.2
1,402,936	+		PP_1227	0.38	-0.7
1,402,936	+		PP_1227	0.38	+0.9
1,402,936	+		PP_1227	0.38	+0.9
1,402,936	+		PP_1227	0.38	+0.4
1,402,936	+		PP_1227	0.38	+1.2
1,402,937	-		PP_1227	0.38	+3.7
1,402,937	-		PP_1227	0.38	-0.4
1,402,937	-		PP_1227	0.38	-1.0
1,403,203	+		PP_1227	0.65	-2.0
1,403,204	-		PP_1227	0.66	-2.6
1,403,204	-		PP_1227	0.66	-0.8
1,403,204	-		PP_1227	0.66	-1.7
1,403,244	+		PP_1227	0.70	-1.3
1,403,244	+		PP_1227	0.70	+1.6
1,403,385	+		PP_1227	0.84	-1.5
1,403,385	+		PP_1227	0.84	-0.9
1,403,478	+				-1.1
1,403,479	-				-1.1
1,403,479	-				+2.1
1,403,528	+				-2.5
1,403,528	+				-0.7
1,403,534	+				-2.3
1,403,535	-				+3.7
1,403,535	-				+1.2
1,403,552	-				-0.9
1,403,552	-				+0.2
1,403,552	-				-2.3
1,403,616	+				-0.3
1,403,616	+				+2.1
1,403,792	+				-0.5
1,403,793	-				-1.1
1,403,837	-		PP_1228	0.11	-3.6
1,404,334	+		PP_1228	0.35	-1.1