Strain Fitness in Pseudomonas putida KT2440 around PP_0873

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
1,012,553	-		PP_0872	0.61	-1.1
1,012,553	-		PP_0872	0.61	+3.2
1,012,781	+		PP_0872	0.75	+0.9
1,012,851	+		PP_0872	0.80	+1.9
1,012,852	-		PP_0872	0.80	+0.9
1,012,948	+		PP_0872	0.86	-0.5
1,012,948	+		PP_0872	0.86	+2.5
1,012,948	+		PP_0872	0.86	+0.9
1,012,949	-		PP_0872	0.86	+1.4
1,012,949	-		PP_0872	0.86	+0.9
1,012,949	-		PP_0872	0.86	+1.9
1,012,974	+		PP_0872	0.87	+0.9
1,012,974	+		PP_0872	0.87	+1.9
1,012,975	-		PP_0872	0.88	+0.9
1,013,086	+				+0.9
1,013,086	+				+0.9
1,013,171	-				-0.8
1,013,254	+				-1.7
1,013,255	-				-0.7
1,013,255	-				-3.8
1,013,290	-				+0.3
1,013,320	+				-0.2
1,013,320	+				+0.3
1,013,320	+				-0.6
1,013,321	-				+3.8
1,013,344	+				-0.6
1,013,344	+				-0.0
1,013,379	+				-0.1
1,013,379	+				-0.0
1,013,380	-				-0.3
1,013,380	-				-1.0
1,013,410	-				+2.2
1,013,419	+		PP_0873	0.11	-1.2
1,013,420	-		PP_0873	0.11	+2.5
1,013,420	-		PP_0873	0.11	-0.6
1,013,422	+		PP_0873	0.11	-0.5
1,013,423	-		PP_0873	0.11	+2.0
1,013,523	+		PP_0873	0.20	-1.4
1,013,523	+		PP_0873	0.20	-3.2
1,013,524	-		PP_0873	0.20	-0.7
1,013,532	+		PP_0873	0.21	+1.4
1,013,532	+		PP_0873	0.21	+0.3
1,013,532	+		PP_0873	0.21	-2.6
1,013,533	-		PP_0873	0.21	+1.4
1,013,533	-		PP_0873	0.21	-1.5
1,013,533	-				+0.9
1,013,533	-		PP_0873	0.21	-1.9
1,013,533	-		PP_0873	0.21	-0.7
1,013,533	-		PP_0873	0.21	-2.0
1,013,538	+		PP_0873	0.22	+0.3
1,013,619	+		PP_0873	0.29	-0.3
1,013,694	-		PP_0873	0.36	-0.9
1,013,694	-		PP_0873	0.36	+4.0
1,013,704	+		PP_0873	0.37	-0.8
1,013,748	+		PP_0873	0.41	+0.9
1,013,749	-		PP_0873	0.41	-1.5
1,013,749	-		PP_0873	0.41	+1.5
1,013,757	+		PP_0873	0.42	-1.9
1,013,757	+		PP_0873	0.42	-0.3
1,013,757	+		PP_0873	0.42	+2.9
1,013,758	-		PP_0873	0.42	-2.4
1,013,758	-		PP_0873	0.42	+2.2
1,013,835	+		PP_0873	0.49	-2.5
1,013,836	-		PP_0873	0.49	-3.5
1,013,988	+		PP_0873	0.63	-0.5
1,013,988	+		PP_0873	0.63	+1.7
1,013,988	+		PP_0873	0.63	-1.5
1,014,016	-		PP_0873	0.66	+0.9
1,014,027	+		PP_0873	0.67	-0.4
1,014,027	+				-0.7
1,014,178	-		PP_0873	0.81	-2.6
1,014,228	+		PP_0873	0.86	+4.6
1,014,229	-		PP_0873	0.86	-0.4
1,014,229	-		PP_0873	0.86	-0.6
1,014,237	+		PP_0873	0.86	-1.4
1,014,237	+		PP_0873	0.86	+0.3
1,014,237	+		PP_0873	0.86	-3.2
1,014,237	+		PP_0873	0.86	-1.1
1,014,237	+		PP_0873	0.86	-2.6
1,014,237	+		PP_0873	0.86	+0.2
1,014,237	+		PP_0873	0.86	-0.7
1,014,238	-		PP_0873	0.87	-2.1
1,014,238	-		PP_0873	0.87	+0.1
1,014,238	-		PP_0873	0.87	-1.1
1,014,238	-		PP_0873	0.87	-0.9
1,014,238	-		PP_0873	0.87	-0.8
1,014,294	+				+1.9
1,014,294	+				-2.1
1,014,295	-				+4.5
1,014,310	-				+1.6
1,014,310	-				+2.8
1,014,310	-				+0.8
1,014,443	+				+1.8
1,014,451	+				-1.4
1,014,451	+				-2.0
1,014,451	+				+0.1
1,014,452	-				+2.5
1,014,528	+		PP_0874	0.27	-0.1
1,014,528	+		PP_0874	0.27	+0.1
1,014,529	-		PP_0874	0.27	-1.3
1,014,792	+				+2.2
1,014,792	+				+0.6
1,014,932	-				-1.2
1,014,932	-				+0.3
1,014,932	-				-0.5
1,015,070	+		PP_0875	0.18	-2.5
1,015,181	+		PP_0875	0.26	+1.5
1,015,181	+		PP_0875	0.26	-3.9
1,015,181	+		PP_0875	0.26	-2.3
1,015,181	+		PP_0875	0.26	-0.0
1,015,182	-		PP_0875	0.26	-1.7
1,015,182	-		PP_0875	0.26	+0.4
1,015,182	-		PP_0875	0.26	+1.7
1,015,195	-		PP_0875	0.27	-1.5
1,015,195	-		PP_0875	0.27	-1.5
1,015,231	+		PP_0875	0.29	-0.1
1,015,232	-		PP_0875	0.29	-0.4
1,015,349	-		PP_0875	0.38	-2.4
1,015,349	-		PP_0875	0.38	+0.5
1,015,349	-		PP_0875	0.38	-0.4