Experiment: pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0753 and PP_0754 are separated by 74 nucleotides PP_0754 and PP_0755 are separated by 67 nucleotides PP_0755 and PP_0756 are separated by 35 nucleotides
PP_0753: PP_0753 - putative Lipoprotein, at 870,568 to 871,152
_0753
PP_0754: PP_0754 - conserved protein of unknown function, at 871,227 to 871,538
_0754
PP_0755: PP_0755 - conserved protein of unknown function, at 871,606 to 871,854
_0755
PP_0756: PP_0756 - conserved protein of unknown function, at 871,890 to 873,161
_0756
Position (kb) 871
872 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 870.763 kb on + strand, within PP_0753 at 870.764 kb on - strand, within PP_0753 at 870.764 kb on - strand, within PP_0753 at 870.764 kb on - strand, within PP_0753 at 870.916 kb on + strand, within PP_0753 at 870.916 kb on + strand at 870.917 kb on - strand, within PP_0753 at 870.917 kb on - strand, within PP_0753 at 870.917 kb on - strand, within PP_0753 at 870.940 kb on + strand, within PP_0753 at 870.940 kb on + strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.941 kb on - strand, within PP_0753 at 870.955 kb on - strand, within PP_0753 at 871.003 kb on + strand, within PP_0753 at 871.150 kb on + strand at 871.151 kb on - strand at 871.151 kb on - strand at 871.151 kb on - strand at 871.228 kb on + strand at 871.228 kb on + strand at 871.228 kb on + strand at 871.239 kb on + strand at 871.239 kb on + strand at 871.239 kb on + strand at 871.239 kb on + strand at 871.240 kb on - strand at 871.240 kb on - strand at 871.240 kb on - strand at 871.321 kb on + strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.322 kb on - strand, within PP_0754 at 871.402 kb on + strand, within PP_0754 at 871.402 kb on + strand, within PP_0754 at 871.403 kb on - strand, within PP_0754 at 871.475 kb on + strand, within PP_0754 at 871.475 kb on + strand, within PP_0754 at 871.552 kb on + strand at 871.552 kb on + strand at 871.553 kb on - strand at 871.553 kb on - strand at 871.729 kb on + strand, within PP_0755 at 871.730 kb on - strand, within PP_0755 at 871.730 kb on - strand, within PP_0755 at 871.740 kb on - strand, within PP_0755 at 871.740 kb on - strand, within PP_0755 at 871.783 kb on + strand, within PP_0755 at 871.783 kb on + strand, within PP_0755 at 871.783 kb on + strand, within PP_0755 at 871.784 kb on - strand, within PP_0755 at 871.789 kb on + strand, within PP_0755 at 871.789 kb on + strand, within PP_0755 at 871.790 kb on - strand, within PP_0755
Per-strain Table
Position Strand Gene LocusTag Fraction pH 6 remove 870,763 + PP_0753 0.33 -2.0 870,764 - PP_0753 0.34 -0.0 870,764 - PP_0753 0.34 -0.6 870,764 - PP_0753 0.34 -1.4 870,916 + PP_0753 0.59 -2.0 870,916 + +0.9 870,917 - PP_0753 0.60 +0.9 870,917 - PP_0753 0.60 -2.0 870,917 - PP_0753 0.60 +0.6 870,940 + PP_0753 0.64 -1.5 870,940 + PP_0753 0.64 -0.0 870,941 - PP_0753 0.64 +1.1 870,941 - PP_0753 0.64 +2.6 870,941 - PP_0753 0.64 -1.2 870,941 - PP_0753 0.64 -1.8 870,955 - PP_0753 0.66 -0.9 871,003 + PP_0753 0.74 -1.3 871,150 + +3.2 871,151 - +1.1 871,151 - +0.9 871,151 - -0.1 871,228 + +0.2 871,228 + +0.1 871,228 + -0.8 871,239 + +1.7 871,239 + +0.7 871,239 + +0.9 871,239 + -0.3 871,240 - +0.9 871,240 - -1.7 871,240 - +2.9 871,321 + PP_0754 0.30 -0.9 871,322 - PP_0754 0.30 +0.7 871,322 - PP_0754 0.30 +0.9 871,322 - PP_0754 0.30 +0.9 871,322 - PP_0754 0.30 -0.4 871,402 + PP_0754 0.56 +0.9 871,402 + PP_0754 0.56 -0.7 871,403 - PP_0754 0.56 -0.7 871,475 + PP_0754 0.79 +0.9 871,475 + PP_0754 0.79 +0.3 871,552 + +2.2 871,552 + -1.3 871,553 - +1.0 871,553 - -2.8 871,729 + PP_0755 0.49 +0.9 871,730 - PP_0755 0.50 +1.6 871,730 - PP_0755 0.50 +1.6 871,740 - PP_0755 0.54 +0.2 871,740 - PP_0755 0.54 +4.2 871,783 + PP_0755 0.71 +0.9 871,783 + PP_0755 0.71 +0.0 871,783 + PP_0755 0.71 -2.3 871,784 - PP_0755 0.71 +0.3 871,789 + PP_0755 0.73 +1.2 871,789 + PP_0755 0.73 +0.4 871,790 - PP_0755 0.74 +3.7
Or see this region's nucleotide sequence