Strain Fitness in Pseudomonas putida KT2440 around PP_0591

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
688,793	+				+0.2
688,793	+				-1.5
688,793	+				+0.9
688,793	+				-2.1
688,817	+				-0.1
688,817	+				+0.5
688,818	-				+0.9
688,859	+				-1.4
688,860	-				+1.1
688,860	-				+0.2
688,860	-				+2.2
688,861	+				+1.7
688,946	+				-2.4
688,946	+				+0.8
688,946	+				-2.6
688,946	+				-1.2
688,946	+				+3.4
688,947	-				-0.7
688,948	+				-1.7
688,948	+				-0.0
688,948	+				-1.2
688,948	+				-0.8
688,948	+				+0.3
688,948	+				+0.4
688,949	-				-0.3
688,949	-				-2.0
688,949	-				+0.8
688,949	-				-0.1
688,949	-				+1.1
688,949	-				-2.5
688,949	-				-0.4
688,949	-				+0.8
688,972	+				+1.0
688,972	+				+0.8
688,972	+				-1.1
688,973	-				+0.5
688,973	-				+0.9
688,973	-				-2.3
689,071	-		PP_0590	0.16	+0.6
689,165	+		PP_0590	0.29	+1.2
689,165	+		PP_0590	0.29	-1.0
689,165	+		PP_0590	0.29	-0.9
689,166	-		PP_0590	0.30	+0.2
689,202	+		PP_0590	0.35	+0.3
689,220	+		PP_0590	0.37	-0.1
689,220	+		PP_0590	0.37	+0.8
689,221	-		PP_0590	0.37	+0.3
689,242	+		PP_0590	0.40	+2.8
689,339	+		PP_0590	0.54	+0.5
689,340	-		PP_0590	0.54	+1.6
689,340	-		PP_0590	0.54	-0.4
689,340	-		PP_0590	0.54	+0.5
689,435	+		PP_0590	0.67	+0.4
689,435	+		PP_0590	0.67	-1.9
689,435	+		PP_0590	0.67	+4.0
689,436	-		PP_0590	0.67	-0.7
689,602	+				-0.3
689,602	+				-2.5
689,602	+				-3.1
689,603	-				-0.4
689,603	-				-0.0
689,603	-				-0.0
689,603	-				+3.7
689,637	+				+0.0
689,686	+				-1.2
689,686	+				-1.8
689,687	-				-2.5
689,761	-				+1.3
689,790	-		PP_0591	0.11	-1.3
689,874	+		PP_0591	0.20	+1.8
689,991	+		PP_0591	0.32	-1.9
689,991	+		PP_0591	0.32	-2.0
689,991	+		PP_0591	0.32	-3.1
689,992	-		PP_0591	0.32	-1.4
690,030	-		PP_0591	0.36	-2.7
690,396	-		PP_0591	0.75	-0.0
690,414	-		PP_0591	0.76	-0.7
690,414	-		PP_0591	0.76	-1.7
690,414	-		PP_0591	0.76	+0.2
690,453	-		PP_0591	0.81	-3.5
690,455	+		PP_0591	0.81	-1.0
690,491	+		PP_0591	0.85	+2.8
690,491	+				-1.7
690,492	-		PP_0591	0.85	-1.2
690,632	+				-3.5
690,632	+				-3.1
690,632	+				-0.0
690,632	+				-0.6
690,632	+				-0.2
690,632	+				-1.3
690,632	+				+0.3
690,632	+				+0.8
690,632	+				-0.2
690,632	+				+0.2
690,632	+				+0.7
690,632	+				+0.7
690,633	-				-1.2
690,633	-				+0.3
690,633	-				+0.0
690,633	-				-1.0
690,633	-				-2.0
690,633	-				+0.1
690,633	-				-1.2
690,633	-				+2.4
690,633	-				+0.0
690,633	-				-1.2
690,633	-				-0.0
690,633	-				-0.4
690,633	-				+0.8
690,636	+				-1.6
690,637	-				+0.1
690,673	+				-2.7
690,674	-				+0.7
690,674	-				+0.6
690,674	-				+2.1
690,747	+				+0.3
690,748	-				-1.1
690,960	+		PP_0592	0.35	-0.7
690,960	+		PP_0592	0.35	-0.6
690,960	+		PP_0592	0.35	+0.9
690,961	-		PP_0592	0.35	-0.1
690,961	-		PP_0592	0.35	+0.7
691,044	-		PP_0592	0.47	-1.2
691,124	+		PP_0592	0.59	-1.0
691,175	+		PP_0592	0.66	-0.3
691,176	-		PP_0592	0.66	+1.8
691,176	-		PP_0592	0.66	-1.5
691,176	-		PP_0592	0.66	-0.8
691,402	+				+0.7
691,450	+				-1.9
691,450	+				+0.6
691,450	+				-2.5
691,450	+				-1.7
691,450	+				-0.7
691,450	+				+0.7
691,451	-				-0.1
691,451	-				-1.4
691,451	-				-0.9
691,451	-				-0.8
691,451	-				-0.2
691,465	-				-0.7
691,465	-				+3.2
691,575	+				-3.7
691,575	+				-2.6
691,576	-				-0.2
691,576	-				-2.0
691,576	-				-1.0
691,576	-				+0.1
691,631	+				-0.5
691,631	+				+2.0
691,632	-				-2.1