Experiment: pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0578 and PP_0579 overlap by 4 nucleotides PP_0579 and PP_0580 overlap by 16 nucleotides PP_0580 and PP_0581 are separated by 2 nucleotides
PP_0578: PP_0578 - putative Methyltransferase, at 675,661 to 676,410
_0578
PP_0579: PP_0579 - conserved protein of unknown function, at 676,407 to 676,805
_0579
PP_0580: PP_0580 - MaoC domain protein, at 676,790 to 677,641
_0580
PP_0581: PP_0581 - 3-oxoacyl-(Acyl-carrier-protein) reductase, at 677,644 to 679,017
_0581
Position (kb) 676
677
678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 675.834 kb on + strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.977 kb on + strand, within PP_0578 at 675.977 kb on + strand, within PP_0578 at 676.358 kb on + strand at 676.358 kb on + strand at 676.359 kb on - strand at 676.359 kb on - strand at 676.498 kb on + strand, within PP_0579 at 676.498 kb on + strand, within PP_0579 at 676.498 kb on + strand, within PP_0579 at 676.724 kb on + strand, within PP_0579 at 676.724 kb on + strand, within PP_0579 at 676.724 kb on + strand, within PP_0579 at 676.724 kb on + strand, within PP_0579 at 676.734 kb on + strand, within PP_0579 at 676.734 kb on + strand, within PP_0579 at 676.734 kb on + strand, within PP_0579 at 676.734 kb on + strand, within PP_0579 at 676.734 kb on + strand, within PP_0579 at 676.735 kb on - strand, within PP_0579 at 676.735 kb on - strand, within PP_0579 at 676.735 kb on - strand, within PP_0579 at 676.816 kb on + strand at 676.816 kb on + strand at 676.816 kb on + strand at 676.817 kb on - strand at 676.817 kb on - strand at 676.935 kb on + strand, within PP_0580 at 676.936 kb on - strand, within PP_0580 at 676.936 kb on - strand, within PP_0580 at 677.054 kb on - strand, within PP_0580 at 677.061 kb on + strand, within PP_0580 at 677.061 kb on + strand, within PP_0580 at 677.062 kb on - strand, within PP_0580 at 677.082 kb on + strand, within PP_0580 at 677.363 kb on + strand, within PP_0580 at 677.364 kb on - strand, within PP_0580 at 677.442 kb on + strand, within PP_0580 at 677.442 kb on + strand, within PP_0580 at 677.442 kb on + strand, within PP_0580 at 677.442 kb on + strand, within PP_0580 at 677.443 kb on - strand, within PP_0580 at 677.443 kb on - strand, within PP_0580 at 677.443 kb on - strand, within PP_0580 at 677.443 kb on - strand, within PP_0580 at 677.443 kb on - strand, within PP_0580 at 677.589 kb on + strand at 677.931 kb on - strand, within PP_0581 at 677.931 kb on - strand, within PP_0581 at 678.017 kb on + strand, within PP_0581 at 678.017 kb on + strand, within PP_0581 at 678.017 kb on + strand, within PP_0581 at 678.018 kb on - strand, within PP_0581 at 678.193 kb on + strand, within PP_0581 at 678.193 kb on + strand at 678.193 kb on + strand, within PP_0581 at 678.194 kb on - strand, within PP_0581 at 678.263 kb on - strand, within PP_0581 at 678.416 kb on - strand, within PP_0581 at 678.500 kb on + strand, within PP_0581 at 678.500 kb on + strand, within PP_0581 at 678.500 kb on + strand, within PP_0581 at 678.500 kb on + strand, within PP_0581 at 678.500 kb on + strand, within PP_0581 at 678.501 kb on - strand, within PP_0581 at 678.501 kb on - strand, within PP_0581 at 678.628 kb on + strand, within PP_0581 at 678.628 kb on + strand, within PP_0581 at 678.628 kb on + strand, within PP_0581 at 678.629 kb on - strand, within PP_0581 at 678.629 kb on - strand, within PP_0581 at 678.629 kb on - strand, within PP_0581 at 678.629 kb on - strand, within PP_0581 at 678.629 kb on - strand, within PP_0581 at 678.629 kb on - strand, within PP_0581
Per-strain Table
Position Strand Gene LocusTag Fraction pH 6 remove 675,834 + PP_0578 0.23 -0.3 675,834 + PP_0578 0.23 -3.7 675,834 + PP_0578 0.23 +0.9 675,835 - PP_0578 0.23 +0.9 675,835 - PP_0578 0.23 +0.9 675,835 - PP_0578 0.23 -1.9 675,977 + PP_0578 0.42 -0.6 675,977 + PP_0578 0.42 +0.9 676,358 + -0.7 676,358 + +0.9 676,359 - -3.2 676,359 - -1.8 676,498 + PP_0579 0.23 -0.0 676,498 + PP_0579 0.23 +1.4 676,498 + PP_0579 0.23 +0.9 676,724 + PP_0579 0.79 +0.9 676,724 + PP_0579 0.79 -2.2 676,724 + PP_0579 0.79 +1.4 676,724 + PP_0579 0.79 -2.5 676,734 + PP_0579 0.82 +0.4 676,734 + PP_0579 0.82 +1.4 676,734 + PP_0579 0.82 +1.0 676,734 + PP_0579 0.82 -0.4 676,734 + PP_0579 0.82 -0.7 676,735 - PP_0579 0.82 -2.2 676,735 - PP_0579 0.82 -2.6 676,735 - PP_0579 0.82 -0.7 676,816 + +0.2 676,816 + +0.9 676,816 + +0.9 676,817 - -2.0 676,817 - +1.9 676,935 + PP_0580 0.17 +1.6 676,936 - PP_0580 0.17 +0.8 676,936 - PP_0580 0.17 +1.0 677,054 - PP_0580 0.31 -1.7 677,061 + PP_0580 0.32 +1.3 677,061 + PP_0580 0.32 -0.1 677,062 - PP_0580 0.32 +1.7 677,082 + PP_0580 0.34 +0.4 677,363 + PP_0580 0.67 +1.6 677,364 - PP_0580 0.67 +0.5 677,442 + PP_0580 0.77 -1.9 677,442 + PP_0580 0.77 +0.3 677,442 + PP_0580 0.77 +0.3 677,442 + PP_0580 0.77 -2.3 677,443 - PP_0580 0.77 +0.1 677,443 - PP_0580 0.77 +0.8 677,443 - PP_0580 0.77 -0.0 677,443 - PP_0580 0.77 +0.9 677,443 - PP_0580 0.77 -0.2 677,589 + +0.3 677,931 - PP_0581 0.21 -0.5 677,931 - PP_0581 0.21 -0.5 678,017 + PP_0581 0.27 -2.5 678,017 + PP_0581 0.27 -1.7 678,017 + PP_0581 0.27 +1.1 678,018 - PP_0581 0.27 -0.2 678,193 + PP_0581 0.40 -2.0 678,193 + +0.8 678,193 + PP_0581 0.40 +0.5 678,194 - PP_0581 0.40 +2.6 678,263 - PP_0581 0.45 -0.2 678,416 - PP_0581 0.56 -2.6 678,500 + PP_0581 0.62 -0.2 678,500 + PP_0581 0.62 -0.0 678,500 + PP_0581 0.62 -1.2 678,500 + PP_0581 0.62 -0.8 678,500 + PP_0581 0.62 -1.5 678,501 - PP_0581 0.62 -0.6 678,501 - PP_0581 0.62 +0.6 678,628 + PP_0581 0.72 -0.4 678,628 + PP_0581 0.72 -0.2 678,628 + PP_0581 0.72 -2.0 678,629 - PP_0581 0.72 -0.5 678,629 - PP_0581 0.72 -2.0 678,629 - PP_0581 0.72 -0.2 678,629 - PP_0581 0.72 +2.8 678,629 - PP_0581 0.72 +0.2 678,629 - PP_0581 0.72 -2.3
Or see this region's nucleotide sequence