Experiment: pH 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0537 and PP_0538 are separated by 182 nucleotides PP_0538 and PP_0539 are separated by 92 nucleotides PP_0539 and PP_0540 are separated by 20 nucleotides PP_0540 and PP_0541 are separated by 217 nucleotides
PP_0537: PP_0537 - putative transcriptional regulator, at 624,205 to 624,906
_0537
PP_0538: PP_0538 - inorganic pyrophosphatase, at 625,089 to 625,616
_0538
PP_0539: PP_0539 - glucose-regulated peptidase, at 625,709 to 626,524
_0539
PP_0540: PP_0540 - conserved inner membrane protein, at 626,545 to 627,192
_0540
PP_0541: PP_0541 - Acetyltransferase, GNAT family, at 627,410 to 627,868
_0541
Position (kb) 625
626
627 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 624.986 kb on + strand at 624.986 kb on + strand at 624.999 kb on + strand at 624.999 kb on + strand at 624.999 kb on + strand at 625.000 kb on - strand at 625.000 kb on - strand at 625.009 kb on + strand at 625.658 kb on - strand at 625.658 kb on - strand at 625.660 kb on - strand at 625.660 kb on - strand at 625.783 kb on - strand at 625.783 kb on - strand at 625.803 kb on + strand, within PP_0539 at 625.803 kb on + strand, within PP_0539 at 625.803 kb on + strand, within PP_0539 at 625.804 kb on - strand, within PP_0539 at 625.816 kb on - strand, within PP_0539 at 625.844 kb on - strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.896 kb on + strand, within PP_0539 at 625.897 kb on - strand, within PP_0539 at 625.956 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.079 kb on + strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.080 kb on - strand, within PP_0539 at 626.288 kb on + strand, within PP_0539 at 626.491 kb on + strand at 626.492 kb on - strand at 626.492 kb on - strand at 626.539 kb on - strand at 626.843 kb on + strand, within PP_0540 at 626.843 kb on + strand, within PP_0540 at 626.856 kb on + strand, within PP_0540 at 626.868 kb on - strand, within PP_0540 at 626.936 kb on + strand, within PP_0540 at 626.936 kb on + strand, within PP_0540 at 627.067 kb on + strand, within PP_0540 at 627.068 kb on - strand, within PP_0540 at 627.068 kb on - strand, within PP_0540 at 627.111 kb on - strand, within PP_0540 at 627.111 kb on - strand, within PP_0540 at 627.125 kb on + strand, within PP_0540 at 627.125 kb on + strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.126 kb on - strand, within PP_0540 at 627.149 kb on + strand at 627.194 kb on + strand at 627.194 kb on + strand at 627.194 kb on + strand at 627.194 kb on + strand at 627.195 kb on - strand at 627.195 kb on - strand at 627.195 kb on - strand at 627.195 kb on - strand at 627.195 kb on - strand at 627.218 kb on - strand at 627.218 kb on - strand at 627.271 kb on - strand at 627.272 kb on + strand at 627.273 kb on - strand at 627.273 kb on - strand at 627.273 kb on - strand at 627.273 kb on - strand at 627.273 kb on - strand at 627.273 kb on - strand at 627.278 kb on + strand at 627.307 kb on - strand at 627.317 kb on + strand at 627.318 kb on - strand at 627.322 kb on + strand at 627.323 kb on - strand at 627.323 kb on - strand at 627.323 kb on - strand at 627.331 kb on - strand at 627.380 kb on + strand at 627.380 kb on + strand at 627.380 kb on + strand at 627.381 kb on - strand at 627.381 kb on - strand at 627.381 kb on - strand at 627.381 kb on - strand at 627.436 kb on - strand at 627.436 kb on - strand at 627.436 kb on - strand at 627.477 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pH 6 remove 624,986 + -0.3 624,986 + -0.2 624,999 + +1.8 624,999 + -1.0 624,999 + +0.5 625,000 - +0.7 625,000 - +0.8 625,009 + -0.2 625,658 - -2.0 625,658 - +0.8 625,660 - -2.8 625,660 - +2.4 625,783 - +1.3 625,783 - +0.3 625,803 + PP_0539 0.12 +1.4 625,803 + PP_0539 0.12 +0.8 625,803 + PP_0539 0.12 -1.8 625,804 - PP_0539 0.12 -1.6 625,816 - PP_0539 0.13 -0.9 625,844 - PP_0539 0.17 -1.8 625,896 + PP_0539 0.23 +0.7 625,896 + PP_0539 0.23 +0.5 625,896 + PP_0539 0.23 -0.6 625,896 + PP_0539 0.23 -3.0 625,897 - PP_0539 0.23 +0.8 625,956 + PP_0539 0.30 +0.8 626,079 + PP_0539 0.45 -1.8 626,079 + PP_0539 0.45 -0.2 626,079 + PP_0539 0.45 +0.2 626,079 + PP_0539 0.45 -2.8 626,079 + PP_0539 0.45 -1.3 626,079 + PP_0539 0.45 -0.9 626,079 + PP_0539 0.45 -3.0 626,080 - PP_0539 0.45 -1.9 626,080 - PP_0539 0.45 +1.6 626,080 - PP_0539 0.45 -1.9 626,080 - PP_0539 0.45 -4.1 626,080 - PP_0539 0.45 +1.8 626,080 - PP_0539 0.45 +4.5 626,288 + PP_0539 0.71 -1.4 626,491 + +0.1 626,492 - -0.1 626,492 - -2.1 626,539 - +0.2 626,843 + PP_0540 0.46 +1.2 626,843 + PP_0540 0.46 +0.4 626,856 + PP_0540 0.48 -0.2 626,868 - PP_0540 0.50 +1.8 626,936 + PP_0540 0.60 -2.3 626,936 + PP_0540 0.60 +0.8 627,067 + PP_0540 0.81 +0.0 627,068 - PP_0540 0.81 +3.4 627,068 - PP_0540 0.81 -0.3 627,111 - PP_0540 0.87 -0.2 627,111 - PP_0540 0.87 +1.8 627,125 + PP_0540 0.90 +0.1 627,125 + PP_0540 0.90 +0.4 627,126 - PP_0540 0.90 -1.1 627,126 - PP_0540 0.90 -1.1 627,126 - PP_0540 0.90 +0.8 627,126 - PP_0540 0.90 +0.1 627,126 - PP_0540 0.90 -0.2 627,126 - PP_0540 0.90 +0.3 627,126 - PP_0540 0.90 +0.1 627,149 + +0.8 627,194 + +0.8 627,194 + +0.8 627,194 + -2.3 627,194 + +1.8 627,195 - -1.8 627,195 - -0.5 627,195 - +5.0 627,195 - -1.2 627,195 - +1.3 627,218 - -0.7 627,218 - +0.2 627,271 - -0.2 627,272 + +2.4 627,273 - +2.8 627,273 - -1.1 627,273 - +0.8 627,273 - -0.2 627,273 - +1.2 627,273 - -0.6 627,278 + +1.6 627,307 - -0.9 627,317 + -0.2 627,318 - +0.7 627,322 + +0.5 627,323 - -0.6 627,323 - -0.9 627,323 - -0.0 627,331 - +1.5 627,380 + +2.4 627,380 + +2.4 627,380 + -2.2 627,381 - +0.4 627,381 - +0.6 627,381 - +0.2 627,381 - -0.6 627,436 - -0.8 627,436 - -1.7 627,436 - -0.9 627,477 + +0.8
Or see this region's nucleotide sequence