Strain Fitness in Pseudomonas putida KT2440 around PP_0383

Experiment: pH 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0381 and PP_0382 are separated by 140 nucleotidesPP_0382 and PP_0383 are separated by 14 nucleotidesPP_0383 and PP_0384 are separated by 253 nucleotidesPP_0384 and PP_0385 are separated by 187 nucleotides PP_0381: PP_0381 - Coenzyme PQQ synthesis protein F, at 460,164 to 462,464 _0381 PP_0382: PP_0382 - 5-aminopentanamidase, at 462,605 to 463,399 _0382 PP_0383: PP_0383 - Lysine 2-monooxygenase, at 463,414 to 465,096 _0383 PP_0384: PP_0384 - Transcriptional regulator, AsnC family, at 465,350 to 465,811 _0384 PP_0385: PP_0385 - putative serine acetyltransferase, at 465,999 to 466,553 _0385 Position (kb) 463 464 465 466Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 462.593 kb on + strandat 462.593 kb on + strandat 462.594 kb on - strandat 462.613 kb on + strandat 462.614 kb on - strandat 462.614 kb on - strandat 462.802 kb on - strand, within PP_0382at 462.802 kb on - strand, within PP_0382at 462.810 kb on + strand, within PP_0382at 462.810 kb on + strand, within PP_0382at 462.811 kb on - strand, within PP_0382at 462.812 kb on + strand, within PP_0382at 462.812 kb on + strand, within PP_0382at 462.812 kb on + strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.813 kb on - strand, within PP_0382at 462.819 kb on + strand, within PP_0382at 462.819 kb on + strand, within PP_0382at 462.819 kb on + strand, within PP_0382at 462.820 kb on - strand, within PP_0382at 462.820 kb on - strand, within PP_0382at 462.865 kb on + strand, within PP_0382at 462.961 kb on - strand, within PP_0382at 462.961 kb on - strand, within PP_0382at 463.120 kb on - strand, within PP_0382at 463.155 kb on + strand, within PP_0382at 463.156 kb on - strand, within PP_0382at 463.156 kb on - strand, within PP_0382at 463.383 kb on + strandat 463.383 kb on + strandat 463.384 kb on - strandat 463.384 kb on - strandat 463.384 kb on - strandat 463.634 kb on + strand, within PP_0383at 463.634 kb on + strand, within PP_0383at 463.635 kb on - strand, within PP_0383at 463.635 kb on - strand, within PP_0383at 463.635 kb on - strand, within PP_0383at 463.694 kb on + strand, within PP_0383at 463.763 kb on + strand, within PP_0383at 463.795 kb on + strand, within PP_0383at 463.899 kb on - strand, within PP_0383at 463.899 kb on - strand, within PP_0383at 463.899 kb on - strand, within PP_0383at 463.899 kb on - strand, within PP_0383at 464.026 kb on - strand, within PP_0383at 464.026 kb on - strand, within PP_0383at 464.117 kb on - strand, within PP_0383at 464.126 kb on + strand, within PP_0383at 464.126 kb on + strand, within PP_0383at 464.127 kb on - strand, within PP_0383at 464.483 kb on + strand, within PP_0383at 464.543 kb on - strand, within PP_0383at 464.543 kb on - strand, within PP_0383at 464.666 kb on + strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.667 kb on - strand, within PP_0383at 464.759 kb on + strand, within PP_0383at 464.759 kb on + strand, within PP_0383at 464.760 kb on - strand, within PP_0383at 464.765 kb on + strand, within PP_0383at 464.765 kb on + strand, within PP_0383at 464.765 kb on + strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.766 kb on - strand, within PP_0383at 464.877 kb on - strand, within PP_0383at 464.912 kb on + strand, within PP_0383at 465.141 kb on + strandat 465.143 kb on + strandat 465.143 kb on + strandat 465.144 kb on - strandat 465.144 kb on - strandat 465.144 kb on - strandat 465.166 kb on + strandat 465.167 kb on - strandat 465.184 kb on + strandat 465.188 kb on + strandat 465.189 kb on - strandat 465.189 kb on - strandat 465.189 kb on - strandat 465.189 kb on - strandat 465.214 kb on - strandat 465.241 kb on + strandat 465.242 kb on - strandat 465.271 kb on + strandat 465.271 kb on + strandat 465.271 kb on + strandat 465.272 kb on - strandat 465.307 kb on + strandat 465.308 kb on - strandat 465.486 kb on + strand, within PP_0384at 465.486 kb on + strand, within PP_0384at 465.487 kb on - strand, within PP_0384at 465.487 kb on - strand, within PP_0384at 465.487 kb on - strandat 465.504 kb on - strand, within PP_0384at 465.591 kb on + strand, within PP_0384at 465.591 kb on + strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.592 kb on - strand, within PP_0384at 465.632 kb on + strand, within PP_0384at 465.640 kb on - strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.649 kb on + strand, within PP_0384at 465.650 kb on - strand, within PP_0384at 465.650 kb on - strand, within PP_0384at 465.650 kb on - strand, within PP_0384at 465.823 kb on - strandat 465.841 kb on + strandat 465.874 kb on + strandat 465.874 kb on + strandat 465.875 kb on - strandat 465.875 kb on - strandat 465.875 kb on - strandat 466.067 kb on + strand, within PP_0385

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 6
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462,593 + +0.4
462,593 + +1.9
462,594 - -1.6
462,613 + -3.9
462,614 - -0.8
462,614 - -2.3
462,802 - PP_0382 0.25 +0.1
462,802 - PP_0382 0.25 +2.9
462,810 + PP_0382 0.26 +0.0
462,810 + PP_0382 0.26 +1.6
462,811 - PP_0382 0.26 -1.0
462,812 + PP_0382 0.26 -0.7
462,812 + PP_0382 0.26 +0.9
462,812 + PP_0382 0.26 -1.6
462,813 - PP_0382 0.26 -2.8
462,813 - PP_0382 0.26 +0.9
462,813 - PP_0382 0.26 -1.7
462,813 - PP_0382 0.26 +0.8
462,813 - PP_0382 0.26 -1.1
462,813 - PP_0382 0.26 +0.9
462,819 + PP_0382 0.27 -1.6
462,819 + PP_0382 0.27 +1.6
462,819 + PP_0382 0.27 +0.9
462,820 - PP_0382 0.27 +2.9
462,820 - PP_0382 0.27 -0.2
462,865 + PP_0382 0.33 +1.9
462,961 - PP_0382 0.45 -1.4
462,961 - PP_0382 0.45 -0.3
463,120 - PP_0382 0.65 +1.5
463,155 + PP_0382 0.69 -1.6
463,156 - PP_0382 0.69 +1.2
463,156 - PP_0382 0.69 -0.6
463,383 + -3.1
463,383 + +0.9
463,384 - -0.5
463,384 - -1.0
463,384 - +1.8
463,634 + PP_0383 0.13 +0.9
463,634 + PP_0383 0.13 -1.0
463,635 - PP_0383 0.13 +2.5
463,635 - PP_0383 0.13 -0.0
463,635 - PP_0383 0.13 -0.9
463,694 + PP_0383 0.17 +2.5
463,763 + PP_0383 0.21 -0.1
463,795 + PP_0383 0.23 +0.9
463,899 - PP_0383 0.29 +0.6
463,899 - PP_0383 0.29 +0.9
463,899 - PP_0383 0.29 +0.3
463,899 - PP_0383 0.29 +1.9
464,026 - PP_0383 0.36 +2.9
464,026 - PP_0383 0.36 +1.6
464,117 - PP_0383 0.42 +0.3
464,126 + PP_0383 0.42 -1.9
464,126 + PP_0383 0.42 -0.5
464,127 - PP_0383 0.42 -1.5
464,483 + PP_0383 0.64 +4.5
464,543 - PP_0383 0.67 +0.3
464,543 - PP_0383 0.67 -0.7
464,666 + PP_0383 0.74 +1.0
464,667 - PP_0383 0.74 -0.1
464,667 - PP_0383 0.74 -1.5
464,667 - PP_0383 0.74 +0.6
464,667 - PP_0383 0.74 +0.9
464,667 - PP_0383 0.74 -0.4
464,667 - PP_0383 0.74 +0.6
464,759 + PP_0383 0.80 +0.5
464,759 + PP_0383 0.80 +0.4
464,760 - PP_0383 0.80 +1.6
464,765 + PP_0383 0.80 +0.9
464,765 + PP_0383 0.80 +0.9
464,765 + PP_0383 0.80 +1.9
464,766 - PP_0383 0.80 -0.6
464,766 - PP_0383 0.80 -1.7
464,766 - PP_0383 0.80 -1.7
464,766 - PP_0383 0.80 +1.9
464,766 - PP_0383 0.80 +1.2
464,877 - PP_0383 0.87 +0.9
464,912 + PP_0383 0.89 +1.1
465,141 + -1.6
465,143 + +1.6
465,143 + +0.6
465,144 - +3.3
465,144 - -0.6
465,144 - +0.5
465,166 + +1.9
465,167 - -2.3
465,184 + -0.5
465,188 + +0.9
465,189 - +1.5
465,189 - -0.4
465,189 - -0.1
465,189 - -0.1
465,214 - +0.9
465,241 + +3.0
465,242 - +4.3
465,271 + +0.1
465,271 + +0.6
465,271 + +3.9
465,272 - -1.7
465,307 + +1.3
465,308 - +2.5
465,486 + PP_0384 0.29 +0.9
465,486 + PP_0384 0.29 +0.9
465,487 - PP_0384 0.30 +0.4
465,487 - PP_0384 0.30 -1.1
465,487 - +0.9
465,504 - PP_0384 0.33 -2.8
465,591 + PP_0384 0.52 +0.1
465,591 + PP_0384 0.52 +0.9
465,592 - PP_0384 0.52 +0.9
465,592 - PP_0384 0.52 +0.9
465,592 - PP_0384 0.52 -0.5
465,592 - PP_0384 0.52 -1.2
465,632 + PP_0384 0.61 -1.6
465,640 - PP_0384 0.63 -0.3
465,649 + PP_0384 0.65 +3.9
465,649 + PP_0384 0.65 -0.5
465,649 + PP_0384 0.65 -1.5
465,649 + PP_0384 0.65 +0.9
465,650 - PP_0384 0.65 -0.7
465,650 - PP_0384 0.65 +0.5
465,650 - PP_0384 0.65 +1.3
465,823 - -1.7
465,841 + +0.3
465,874 + +0.3
465,874 + +0.9
465,875 - -1.3
465,875 - +3.2
465,875 - -0.9
466,067 + PP_0385 0.12 +0.7

Or see this region's nucleotide sequence