Strain Fitness in Pseudomonas putida KT2440 around PP_0221

Experiment: pH 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0220 and PP_0221 are separated by 1 nucleotidesPP_0221 and PP_0222 overlap by 8 nucleotides PP_0220: PP_0220 - methionine import ATP-binding protein metN2, at 272,658 to 273,767 _0220 PP_0221: PP_0221 - methionine ABC transporter periplasmic-binding lipoprotein (metQ-like protein), at 273,769 to 274,569 _0221 PP_0222: PP_0222 - Monooxygenase, DszA family, at 274,562 to 275,947 _0222 Position (kb) 273 274 275Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 273.271 kb on + strand, within PP_0220at 273.495 kb on + strand, within PP_0220at 273.551 kb on + strand, within PP_0220at 273.552 kb on - strandat 273.552 kb on - strand, within PP_0220at 273.644 kb on - strand, within PP_0220at 273.791 kb on + strandat 273.792 kb on - strandat 273.792 kb on - strandat 273.792 kb on - strandat 273.792 kb on - strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.845 kb on + strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.846 kb on - strandat 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.914 kb on + strand, within PP_0221at 273.915 kb on - strand, within PP_0221at 273.915 kb on - strand, within PP_0221at 273.954 kb on + strand, within PP_0221at 273.983 kb on + strand, within PP_0221at 273.983 kb on + strand, within PP_0221at 273.983 kb on + strand, within PP_0221at 273.984 kb on - strand, within PP_0221at 274.103 kb on + strand, within PP_0221at 274.104 kb on - strand, within PP_0221at 274.337 kb on + strand, within PP_0221at 274.337 kb on + strand, within PP_0221at 274.476 kb on + strand, within PP_0221at 274.597 kb on + strandat 274.684 kb on - strandat 274.696 kb on - strandat 274.853 kb on + strand, within PP_0222at 274.853 kb on + strand, within PP_0222at 274.853 kb on + strand, within PP_0222at 274.854 kb on - strand, within PP_0222at 274.857 kb on + strand, within PP_0222at 275.052 kb on + strand, within PP_0222at 275.317 kb on - strand, within PP_0222at 275.331 kb on + strand, within PP_0222at 275.331 kb on + strand, within PP_0222at 275.379 kb on + strand, within PP_0222at 275.379 kb on + strand, within PP_0222at 275.380 kb on - strand, within PP_0222at 275.380 kb on - strand, within PP_0222at 275.380 kb on - strand, within PP_0222at 275.380 kb on - strand, within PP_0222at 275.442 kb on + strand, within PP_0222at 275.442 kb on + strand, within PP_0222at 275.442 kb on + strand, within PP_0222at 275.443 kb on - strand, within PP_0222at 275.457 kb on + strand, within PP_0222

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 6
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273,271 + PP_0220 0.55 +1.0
273,495 + PP_0220 0.75 +0.1
273,551 + PP_0220 0.80 -1.0
273,552 - -0.2
273,552 - PP_0220 0.81 +0.1
273,644 - PP_0220 0.89 +0.8
273,791 + +0.3
273,792 - -2.0
273,792 - -0.3
273,792 - -0.9
273,792 - +0.8
273,845 + +0.8
273,845 + -0.4
273,845 + -0.7
273,845 + -0.6
273,845 + -0.3
273,846 - +2.8
273,846 - +1.8
273,846 - -0.4
273,846 - -2.3
273,846 - -2.0
273,846 - -0.9
273,914 + PP_0221 0.18 -2.2
273,914 + PP_0221 0.18 -2.7
273,914 + PP_0221 0.18 -1.4
273,914 + PP_0221 0.18 -0.7
273,914 + PP_0221 0.18 -3.5
273,915 - PP_0221 0.18 +0.8
273,915 - PP_0221 0.18 -3.6
273,954 + PP_0221 0.23 -0.8
273,983 + PP_0221 0.27 +1.8
273,983 + PP_0221 0.27 -2.3
273,983 + PP_0221 0.27 -0.9
273,984 - PP_0221 0.27 -0.4
274,103 + PP_0221 0.42 -1.4
274,104 - PP_0221 0.42 +0.3
274,337 + PP_0221 0.71 -1.7
274,337 + PP_0221 0.71 +0.7
274,476 + PP_0221 0.88 +1.2
274,597 + +1.0
274,684 - +0.2
274,696 - -0.5
274,853 + PP_0222 0.21 +0.8
274,853 + PP_0222 0.21 -1.3
274,853 + PP_0222 0.21 +1.5
274,854 - PP_0222 0.21 +0.1
274,857 + PP_0222 0.21 +1.2
275,052 + PP_0222 0.35 +1.8
275,317 - PP_0222 0.54 -1.0
275,331 + PP_0222 0.55 +1.8
275,331 + PP_0222 0.55 +1.6
275,379 + PP_0222 0.59 +1.5
275,379 + PP_0222 0.59 -0.7
275,380 - PP_0222 0.59 -0.2
275,380 - PP_0222 0.59 +0.0
275,380 - PP_0222 0.59 +0.8
275,380 - PP_0222 0.59 +0.4
275,442 + PP_0222 0.63 -2.9
275,442 + PP_0222 0.63 +0.1
275,442 + PP_0222 0.63 +0.1
275,443 - PP_0222 0.64 +1.8
275,457 + PP_0222 0.65 +0.2

Or see this region's nucleotide sequence