Strain Fitness in Pseudomonas putida KT2440 around PP_0213

Experiment: pH 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0210 and PP_0211 overlap by 1 nucleotidesPP_0211 and PP_0213 are separated by 484 nucleotidesPP_0213 and PP_0214 are separated by 182 nucleotides PP_0210: PP_0210 - putative Phycobiliprotein, at 261,519 to 262,484 _0210 PP_0211: PP_0211 - conserved protein of unknown function, at 262,484 to 262,765 _0211 PP_0213: PP_0213 - succinate-semialdehyde dehydrogenase (NADP+), at 263,250 to 264,692 _0213 PP_0214: PP_0214 - 4-aminobutyrate aminotransferase, at 264,875 to 266,152 _0214 Position (kb) 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 262.288 kb on - strand, within PP_0210at 262.682 kb on + strand, within PP_0211at 262.683 kb on - strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.689 kb on + strand, within PP_0211at 262.690 kb on - strand, within PP_0211at 262.727 kb on + strand, within PP_0211at 262.728 kb on - strand, within PP_0211at 262.728 kb on - strand, within PP_0211at 262.739 kb on + strandat 262.739 kb on + strandat 262.740 kb on - strandat 262.838 kb on - strandat 262.902 kb on + strandat 263.052 kb on - strandat 263.147 kb on - strandat 263.147 kb on - strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.289 kb on + strandat 263.290 kb on - strandat 263.290 kb on - strandat 263.290 kb on - strandat 263.291 kb on + strandat 263.291 kb on + strandat 263.292 kb on - strandat 263.292 kb on - strandat 263.292 kb on - strandat 263.297 kb on - strandat 263.628 kb on + strand, within PP_0213at 263.628 kb on + strand, within PP_0213at 263.628 kb on + strand, within PP_0213at 263.809 kb on - strand, within PP_0213at 264.131 kb on + strand, within PP_0213at 264.131 kb on + strand, within PP_0213at 264.131 kb on + strand, within PP_0213at 264.131 kb on + strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.132 kb on - strand, within PP_0213at 264.135 kb on + strand, within PP_0213at 264.135 kb on + strand, within PP_0213at 264.136 kb on - strand, within PP_0213at 264.493 kb on - strand, within PP_0213at 264.605 kb on + strandat 264.642 kb on + strandat 264.643 kb on - strandat 264.643 kb on - strandat 264.657 kb on + strandat 264.658 kb on - strandat 264.693 kb on + strandat 264.694 kb on - strandat 264.694 kb on - strandat 264.701 kb on + strandat 264.702 kb on - strandat 264.710 kb on + strandat 264.710 kb on + strandat 264.711 kb on - strandat 264.711 kb on - strandat 264.711 kb on - strandat 264.711 kb on - strandat 264.756 kb on + strandat 264.766 kb on + strandat 264.767 kb on - strandat 264.806 kb on + strandat 264.806 kb on + strandat 264.806 kb on + strandat 264.874 kb on + strandat 264.874 kb on + strandat 264.874 kb on + strandat 264.874 kb on + strandat 264.875 kb on - strandat 264.913 kb on - strandat 265.062 kb on + strand, within PP_0214at 265.062 kb on + strand, within PP_0214at 265.124 kb on + strand, within PP_0214at 265.133 kb on + strand, within PP_0214at 265.133 kb on + strand, within PP_0214at 265.134 kb on - strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.137 kb on + strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.138 kb on - strand, within PP_0214at 265.300 kb on + strand, within PP_0214at 265.300 kb on + strand, within PP_0214at 265.300 kb on + strand, within PP_0214at 265.340 kb on + strand, within PP_0214at 265.341 kb on - strand, within PP_0214at 265.408 kb on + strand, within PP_0214at 265.500 kb on + strand, within PP_0214at 265.599 kb on + strand, within PP_0214

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Per-strain Table

Position Strand Gene LocusTag Fraction pH 6
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262,288 - PP_0210 0.80 -2.6
262,682 + PP_0211 0.70 -2.5
262,683 - PP_0211 0.71 +4.3
262,689 + PP_0211 0.73 +0.5
262,689 + PP_0211 0.73 -1.0
262,689 + PP_0211 0.73 -0.9
262,689 + PP_0211 0.73 +0.8
262,690 - PP_0211 0.73 +0.1
262,727 + PP_0211 0.86 +0.1
262,728 - PP_0211 0.87 -0.7
262,728 - PP_0211 0.87 +0.8
262,739 + -0.0
262,739 + -1.7
262,740 - -1.5
262,838 - +0.5
262,902 + +1.4
263,052 - -1.7
263,147 - +0.3
263,147 - -0.5
263,289 + -0.5
263,289 + -1.5
263,289 + +0.1
263,289 + -0.4
263,289 + -0.7
263,289 + -0.9
263,289 + +0.8
263,290 - -0.7
263,290 - -0.4
263,290 - +1.3
263,291 + +0.4
263,291 + -0.7
263,292 - +1.8
263,292 - +0.8
263,292 - +0.8
263,297 - -1.6
263,628 + PP_0213 0.26 +2.0
263,628 + PP_0213 0.26 +2.1
263,628 + PP_0213 0.26 +2.4
263,809 - PP_0213 0.39 -0.7
264,131 + PP_0213 0.61 -0.8
264,131 + PP_0213 0.61 +0.1
264,131 + PP_0213 0.61 +0.7
264,131 + PP_0213 0.61 -1.0
264,132 - PP_0213 0.61 +3.2
264,132 - PP_0213 0.61 +3.4
264,132 - PP_0213 0.61 -0.0
264,132 - PP_0213 0.61 +0.8
264,135 + PP_0213 0.61 +0.8
264,135 + PP_0213 0.61 +4.0
264,136 - PP_0213 0.61 +0.8
264,493 - PP_0213 0.86 +2.4
264,605 + +3.4
264,642 + +1.8
264,643 - -1.7
264,643 - -1.5
264,657 + +0.2
264,658 - +0.8
264,693 + -0.4
264,694 - +2.4
264,694 - +0.8
264,701 + +0.1
264,702 - -1.6
264,710 + -1.0
264,710 + -1.4
264,711 - -1.5
264,711 - +0.8
264,711 - +0.8
264,711 - +0.8
264,756 + -0.8
264,766 + +0.9
264,767 - -2.7
264,806 + -0.4
264,806 + +0.3
264,806 + -3.6
264,874 + -1.5
264,874 + -1.7
264,874 + +0.9
264,874 + -3.0
264,875 - +1.9
264,913 - -2.4
265,062 + PP_0214 0.15 -1.7
265,062 + PP_0214 0.15 +1.9
265,124 + PP_0214 0.19 +0.9
265,133 + PP_0214 0.20 +0.9
265,133 + PP_0214 0.20 +2.2
265,134 - PP_0214 0.20 +2.9
265,137 + PP_0214 0.21 +0.9
265,137 + PP_0214 0.21 -1.6
265,137 + PP_0214 0.21 +1.5
265,137 + PP_0214 0.21 +1.9
265,138 - PP_0214 0.21 -2.5
265,138 - PP_0214 0.21 +1.9
265,138 - PP_0214 0.21 -0.5
265,138 - PP_0214 0.21 +0.9
265,138 - PP_0214 0.21 +0.9
265,300 + PP_0214 0.33 -1.0
265,300 + PP_0214 0.33 +4.0
265,300 + PP_0214 0.33 +0.9
265,340 + PP_0214 0.36 -0.4
265,341 - PP_0214 0.36 -1.8
265,408 + PP_0214 0.42 -0.8
265,500 + PP_0214 0.49 +0.9
265,599 + PP_0214 0.57 +0.9

Or see this region's nucleotide sequence