Strain Fitness in Pseudomonas putida KT2440 around PP_0051

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
58,451	+				-0.3
58,451	+				-0.9
58,452	-				-1.9
58,501	+				-0.9
58,501	+				+0.5
58,502	-				-0.1
58,502	-				-2.3
58,502	-				+1.9
58,508	+				-1.3
58,508	+				+0.4
58,508	+				+0.1
58,508	+				+3.0
58,509	-				+1.4
58,509	-				+0.8
58,509	-				-0.8
58,526	-				+4.0
58,607	-				+0.1
58,698	+				-2.2
58,699	-				-0.2
58,711	+				+0.2
58,711	+				+1.5
58,712	-				+0.7
58,712	-				-1.9
58,712	-				+1.1
58,720	+				-2.0
58,736	-				-0.5
58,781	+				-0.2
58,832	+		PP_0050	0.13	+2.4
58,847	+		PP_0050	0.17	-0.8
58,847	+		PP_0050	0.17	+0.8
58,847	+		PP_0050	0.17	-1.1
58,847	+		PP_0050	0.17	+0.1
58,848	-		PP_0050	0.17	+1.8
58,848	-		PP_0050	0.17	-3.0
58,848	-		PP_0050	0.17	-0.8
58,877	+		PP_0050	0.25	+2.8
58,878	-		PP_0050	0.25	+1.6
58,878	-		PP_0050	0.25	-2.6
58,878	-		PP_0050	0.25	-0.9
58,904	-		PP_0050	0.31	-0.0
58,925	+		PP_0050	0.36	+0.7
58,962	+		PP_0050	0.45	+0.3
58,962	+		PP_0050	0.45	+0.8
58,963	-		PP_0050	0.46	-0.3
58,963	-		PP_0050	0.46	+4.3
58,969	+		PP_0050	0.47	-2.6
58,969	+		PP_0050	0.47	-0.3
59,207	+				+4.5
59,208	-				+0.4
59,222	+				+1.8
59,222	+				-1.0
59,223	-				-0.5
59,347	+				+0.1
59,564	+		PP_0051	0.19	-1.8
59,564	+		PP_0051	0.19	-2.0
59,731	+		PP_0051	0.32	-1.8
59,731	+		PP_0051	0.32	-2.4
59,731	+		PP_0051	0.32	-0.8
59,732	-		PP_0051	0.32	+0.8
59,732	-		PP_0051	0.32	+0.1
59,732	-		PP_0051	0.32	+1.5
59,732	-		PP_0051	0.32	+4.2
59,771	+		PP_0051	0.35	+0.8
59,771	+		PP_0051	0.35	-1.1
59,780	+		PP_0051	0.36	+0.8
59,780	+		PP_0051	0.36	-0.3
59,856	+		PP_0051	0.42	+0.8
59,857	-		PP_0051	0.42	-1.3
59,857	-		PP_0051	0.42	+1.8
60,270	+		PP_0051	0.74	+0.5
60,270	+		PP_0051	0.74	+1.5
60,270	+		PP_0051	0.74	-0.2
60,270	+		PP_0051	0.74	+0.4
60,427	+		PP_0051	0.86	+0.7
60,428	-		PP_0051	0.86	+1.1
60,496	+				-0.0
60,496	+				+0.8
60,523	+				+0.8
60,523	+				+0.5
60,523	+				-0.8
60,524	-				+1.5
60,524	-				-2.3
60,568	+				+0.8
60,568	+				+0.2
60,569	-				-0.0
60,583	-				-2.5
60,583	-				-2.2
60,583	-				-0.8
60,619	+				-1.2
60,619	+				-1.9
60,620	-				+4.2
60,620	-				+0.4
60,620	-				+0.3
60,772	+				+0.6
60,773	-				-2.5
60,791	+				-0.2
60,791	+				+0.8
60,791	+				+0.2
60,792	-				-4.3
60,799	+				+0.2
60,799	+				-0.0
60,799	+				-3.1
60,800	-				+0.1
60,800	-				-0.6
60,894	+				+0.8
60,895	-				-0.3
60,952	-				+0.8
61,051	-		PP_0052	0.25	+0.7
61,054	+		PP_0052	0.25	+0.8
61,054	+		PP_0052	0.25	-0.2
61,054	+		PP_0052	0.25	+0.7
61,130	+		PP_0052	0.34	-3.1
61,130	+		PP_0052	0.34	+2.4
61,359	+		PP_0052	0.60	+0.6
61,360	-		PP_0052	0.60	-0.5
61,360	-		PP_0052	0.60	-2.3
61,407	+		PP_0052	0.65	-2.2
61,470	+		PP_0052	0.72	-0.2
61,471	-		PP_0052	0.72	-0.9
61,497	+		PP_0052	0.75	-0.8
61,497	+		PP_0052	0.75	+0.8
61,498	-		PP_0052	0.75	+3.6
61,498	-		PP_0052	0.75	+0.9
61,498	-		PP_0052	0.75	+0.1
61,498	-		PP_0052	0.75	-0.1
61,498	-		PP_0052	0.75	-0.4
61,498	-				+0.8
61,498	-		PP_0052	0.75	-2.6
61,498	-		PP_0052	0.75	+0.5