Strain Fitness in Pseudomonas putida KT2440 around PP_0016

Experiment: pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 6
19,205	+				+0.2
19,205	+				-1.9
19,206	-				+1.4
19,206	-				+0.7
19,206	-				-1.2
19,213	+				+0.8
19,213	+				+0.8
19,213	+				-1.3
19,213	+				-1.2
19,213	+				+2.8
19,214	-				+0.2
19,231	+				+0.4
19,232	-				+0.2
19,269	+		PP_0015	0.11	-0.0
19,270	-		PP_0015	0.11	+1.5
19,309	+		PP_0015	0.15	-0.2
19,309	+		PP_0015	0.15	+0.7
19,310	-		PP_0015	0.15	+0.8
19,367	+		PP_0015	0.21	-0.3
19,367	+		PP_0015	0.21	-0.2
19,367	+		PP_0015	0.21	-0.4
19,368	-		PP_0015	0.21	+1.5
19,368	-		PP_0015	0.21	+1.0
19,529	-		PP_0015	0.38	+0.2
19,529	-		PP_0015	0.38	+0.1
19,542	+		PP_0015	0.39	-1.0
19,543	-		PP_0015	0.40	+1.0
19,610	+		PP_0015	0.47	+0.3
19,618	+		PP_0015	0.47	+0.3
19,618	+		PP_0015	0.47	+1.7
19,618	+		PP_0015	0.47	-0.8
19,619	-		PP_0015	0.47	+0.2
19,619	-		PP_0015	0.47	-2.0
19,619	-		PP_0015	0.47	-0.8
19,628	+		PP_0015	0.48	+0.1
19,628	+		PP_0015	0.48	-1.6
19,629	-		PP_0015	0.49	+0.1
19,629	-		PP_0015	0.49	-0.1
19,629	-		PP_0015	0.49	-1.4
19,629	-		PP_0015	0.49	+1.9
19,629	-		PP_0015	0.49	+0.2
19,672	+		PP_0015	0.53	+2.8
19,720	-		PP_0015	0.58	-2.2
19,789	+		PP_0015	0.65	-2.5
19,789	+		PP_0015	0.65	+2.4
19,789	+		PP_0015	0.65	-2.4
19,790	-		PP_0015	0.65	+0.2
19,790	-		PP_0015	0.65	+0.7
19,790	-		PP_0015	0.65	-0.3
19,790	-		PP_0015	0.65	+1.8
19,860	+		PP_0015	0.73	-0.1
19,876	+		PP_0015	0.74	+1.0
19,877	-		PP_0015	0.74	+0.8
19,877	-		PP_0015	0.74	+1.5
19,886	+		PP_0015	0.75	-0.2
19,886	+		PP_0015	0.75	-0.8
19,886	+		PP_0015	0.75	+0.6
19,887	-		PP_0015	0.75	-0.5
19,898	+		PP_0015	0.77	+1.6
19,913	+		PP_0015	0.78	+0.8
19,913	+		PP_0015	0.78	-0.8
19,914	-				-0.2
20,021	+		PP_0015	0.89	-3.7
20,021	+		PP_0015	0.89	+0.8
20,022	-		PP_0015	0.89	-1.9
20,022	-		PP_0015	0.89	-0.4
20,022	-		PP_0015	0.89	-0.8
20,022	-		PP_0015	0.89	-1.2
20,116	+				+0.8
20,116	+				+4.0
20,117	-				-1.7
20,117	-				+0.8
20,117	-				+0.8
20,117	-				+2.2
20,154	+				+0.0
20,170	-				-0.7
20,170	-				+1.0
20,170	-				-2.3
20,193	+				+0.8
20,194	-				-1.3
20,194	-				+0.8
20,211	+				+0.0
20,211	+				+3.8
20,211	+				-2.8
20,211	+				-1.5
20,211	+				-0.9
20,211	+				-0.2
20,212	-				+1.8
20,212	-				-1.8
20,212	-				-0.3
20,252	+				-0.2
20,425	-		PP_0016	0.12	-0.3
20,425	-		PP_0016	0.12	+1.4
20,425	-		PP_0016	0.12	-2.6
20,425	-		PP_0016	0.12	+4.2
20,447	+		PP_0016	0.13	-1.8
20,596	+		PP_0016	0.21	-3.3
20,597	-		PP_0016	0.21	-0.9
20,659	+		PP_0016	0.24	-1.5
20,659	+		PP_0016	0.24	+0.5
20,700	-		PP_0016	0.26	-1.5
20,745	-		PP_0016	0.29	-0.8
20,838	+		PP_0016	0.33	+0.6
20,844	+		PP_0016	0.34	+2.4
20,854	+		PP_0016	0.34	-2.1
20,855	-		PP_0016	0.34	-0.8
20,855	-		PP_0016	0.34	-0.9
20,979	+		PP_0016	0.41	-1.5
20,980	-		PP_0016	0.41	+2.1
20,981	+		PP_0016	0.41	+0.1
20,981	+		PP_0016	0.41	-2.2
20,981	+		PP_0016	0.41	-3.0
20,981	+		PP_0016	0.41	+1.2
20,981	+		PP_0016	0.41	+1.8
20,981	+		PP_0016	0.41	-1.1
20,982	-		PP_0016	0.41	-0.0
20,982	-		PP_0016	0.41	-0.3
20,982	-		PP_0016	0.41	+0.8
21,075	+		PP_0016	0.46	+0.0
21,168	+		PP_0016	0.51	-2.8
21,169	-		PP_0016	0.51	-1.2
21,241	+		PP_0016	0.54	-1.2
21,241	+		PP_0016	0.54	-1.0
21,241	+		PP_0016	0.54	-0.6
21,241	+		PP_0016	0.54	+0.0
21,242	-		PP_0016	0.54	-0.4
21,242	-		PP_0016	0.54	-1.1
21,324	+		PP_0016	0.59	-2.6
21,325	-		PP_0016	0.59	-0.2
21,325	-		PP_0016	0.59	+0.5
21,357	+		PP_0016	0.60	-0.6
21,357	+		PP_0016	0.60	-3.8
21,357	+		PP_0016	0.60	-1.8
21,358	-		PP_0016	0.61	+0.5
21,358	-		PP_0016	0.61	-4.3
21,368	-		PP_0016	0.61	-3.1
21,460	+		PP_0016	0.66	-0.8
21,495	-		PP_0016	0.68	-0.2
21,495	-		PP_0016	0.68	-0.4
21,495	-		PP_0016	0.68	-0.5
21,497	-		PP_0016	0.68	-0.3
21,552	+		PP_0016	0.71	-0.8
21,552	+		PP_0016	0.71	+3.8
21,552	+		PP_0016	0.71	-1.3
21,553	-		PP_0016	0.71	-0.8
21,553	-		PP_0016	0.71	-0.5
21,553	-		PP_0016	0.71	-0.6
21,553	-		PP_0016	0.71	-1.2
21,553	-		PP_0016	0.71	+2.0
21,553	-		PP_0016	0.71	+2.7
21,575	+		PP_0016	0.72	+1.0
21,575	+		PP_0016	0.72	-1.1
21,618	+		PP_0016	0.74	-0.2
21,619	-		PP_0016	0.74	-1.5
21,717	+		PP_0016	0.79	-1.0
21,718	-		PP_0016	0.79	+1.9
21,718	-		PP_0016	0.79	+0.4
21,718	-		PP_0016	0.79	-3.8
21,740	+		PP_0016	0.80	-0.0
21,740	+		PP_0016	0.80	-0.6
21,765	+		PP_0016	0.82	-2.9
21,766	-		PP_0016	0.82	-0.8
21,811	+		PP_0016	0.84	+0.8
21,811	+		PP_0016	0.84	+1.4
21,812	-		PP_0016	0.84	-3.2
21,812	-		PP_0016	0.84	+0.4
21,845	+		PP_0016	0.86	-0.8
21,845	+		PP_0016	0.86	+1.7
21,845	+		PP_0016	0.86	+0.8
21,845	+		PP_0016	0.86	+1.8
21,845	+		PP_0016	0.86	+0.5
21,845	+		PP_0016	0.86	+0.3
21,846	-		PP_0016	0.86	-2.8
21,846	-		PP_0016	0.86	-0.7
21,846	-		PP_0016	0.86	+0.8
21,846	-		PP_0016	0.86	-2.0
21,847	+		PP_0016	0.86	-0.6
21,847	+		PP_0016	0.86	-1.3
21,848	-		PP_0016	0.86	-0.3
21,872	+		PP_0016	0.87	-1.2
21,872	+		PP_0016	0.87	+0.8
21,972	-				-0.7
21,972	-				+0.3
22,005	-				+0.8
22,112	+				+0.6
22,117	-				-1.4
22,117	-				-1.5
22,140	+				-1.2
22,170	+				-2.4
22,170	+				-0.4
22,170	+				-3.0
22,170	+				-1.2
22,171	-				-2.3
22,171	-				-0.3
22,171	-				-0.0
22,171	-				-0.5
22,171	-				+0.8
22,171	-				-2.2
22,309	+		PP_0017	0.38	-0.1
22,309	+		PP_0017	0.38	-3.7
22,371	+		PP_0017	0.56	+0.8
22,371	+		PP_0017	0.56	-0.2
22,406	+		PP_0017	0.65	-0.9
22,406	+		PP_0017	0.65	-1.0
22,407	-		PP_0017	0.66	-1.5
22,407	-		PP_0017	0.66	-1.1
22,415	-		PP_0017	0.68	+2.4
22,415	-		PP_0017	0.68	+1.1
22,459	-		PP_0017	0.80	-0.4
22,467	+		PP_0017	0.82	-2.7
22,467	+		PP_0017	0.82	-0.0
22,467	+		PP_0017	0.82	+2.0
22,474	-		PP_0017	0.84	+0.3
22,492	+		PP_0017	0.89	-3.3
22,493	-		PP_0017	0.89	+0.9
22,505	+				-1.4
22,506	-				+0.2
22,640	+				-0.4
22,649	+				+0.8
22,650	-				+1.4
22,650	-				+1.8
22,653	+				-0.2
22,654	-				+0.8
22,839	+				-1.5
22,839	+				+0.7
22,840	-				+0.7
22,840	-				-0.2
22,840	-				-0.3
22,840	-				+0.2
22,913	-				-1.8
22,948	+				+1.7
22,948	+				+1.4
22,990	+				+0.0
22,991	-				-0.5
23,005	+				+0.6
23,029	+				-0.3
23,029	+				-1.7
23,030	-				+0.8
23,030	-				-2.4
23,101	+				-1.6
23,101	+				+2.9
23,103	+				-0.4
23,103	+				+0.2
23,103	+				-1.9
23,103	+				-1.3
23,103	+				+0.6
23,103	+				-0.2