Strain Fitness in Agrobacterium fabrum C58 around Atu5064

Experiment: Mandelic 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5063 and Atu5064 are separated by 245 nucleotidesAtu5064 and Atu5065 are separated by 132 nucleotides Atu5063: Atu5063 - RpiR family transcriptional regulator, at 61,763 to 62,641 Atu5063 Atu5064: Atu5064 - MarR family transcriptional regulator, at 62,887 to 63,339 Atu5064 Atu5065: Atu5065 - non-heme chloroperoxidase, at 63,472 to 64,293 Atu5065 Position (kb) 62 63 64Strain fitness (log2 ratio) -1 0 1at 61.916 kb on + strand, within Atu5063at 61.916 kb on + strand, within Atu5063at 61.922 kb on + strand, within Atu5063at 61.930 kb on - strand, within Atu5063at 61.961 kb on - strand, within Atu5063at 61.999 kb on - strand, within Atu5063at 62.057 kb on - strand, within Atu5063at 62.093 kb on + strand, within Atu5063at 62.093 kb on + strand, within Atu5063at 62.093 kb on + strand, within Atu5063at 62.093 kb on + strand, within Atu5063at 62.093 kb on + strand, within Atu5063at 62.101 kb on - strand, within Atu5063at 62.126 kb on + strand, within Atu5063at 62.126 kb on + strand, within Atu5063at 62.136 kb on + strand, within Atu5063at 62.172 kb on + strand, within Atu5063at 62.225 kb on + strand, within Atu5063at 62.391 kb on + strand, within Atu5063at 62.459 kb on + strand, within Atu5063at 62.493 kb on + strand, within Atu5063at 62.511 kb on + strand, within Atu5063at 62.546 kb on + strand, within Atu5063at 62.625 kb on + strandat 62.625 kb on + strandat 62.663 kb on - strandat 62.666 kb on - strandat 62.699 kb on + strandat 62.718 kb on - strandat 62.733 kb on - strandat 62.745 kb on + strandat 62.754 kb on - strandat 62.768 kb on + strandat 62.776 kb on - strandat 62.789 kb on + strandat 62.789 kb on + strandat 62.789 kb on + strandat 62.826 kb on - strandat 62.843 kb on + strandat 62.848 kb on - strandat 62.967 kb on + strand, within Atu5064at 62.967 kb on + strand, within Atu5064at 63.039 kb on - strand, within Atu5064at 63.068 kb on - strand, within Atu5064at 63.211 kb on - strand, within Atu5064at 63.211 kb on - strand, within Atu5064at 63.216 kb on - strand, within Atu5064at 63.216 kb on - strand, within Atu5064at 63.244 kb on - strand, within Atu5064at 63.244 kb on - strand, within Atu5064at 63.244 kb on - strand, within Atu5064at 63.244 kb on - strand, within Atu5064at 63.244 kb on - strand, within Atu5064at 63.246 kb on + strand, within Atu5064at 63.254 kb on - strand, within Atu5064at 63.271 kb on - strand, within Atu5064at 63.496 kb on - strandat 63.516 kb on + strandat 63.535 kb on - strandat 63.636 kb on + strand, within Atu5065at 63.655 kb on + strand, within Atu5065at 63.663 kb on - strand, within Atu5065at 63.663 kb on - strand, within Atu5065at 63.706 kb on + strand, within Atu5065at 63.714 kb on - strand, within Atu5065at 63.867 kb on + strand, within Atu5065at 63.904 kb on + strand, within Atu5065at 64.019 kb on + strand, within Atu5065at 64.019 kb on + strand, within Atu5065at 64.024 kb on + strand, within Atu5065at 64.027 kb on - strand, within Atu5065at 64.027 kb on - strand, within Atu5065at 64.027 kb on - strand, within Atu5065at 64.088 kb on - strand, within Atu5065at 64.111 kb on - strand, within Atu5065at 64.111 kb on - strand, within Atu5065at 64.127 kb on + strand, within Atu5065at 64.175 kb on + strand, within Atu5065at 64.180 kb on + strand, within Atu5065at 64.193 kb on - strand, within Atu5065at 64.236 kb on + strandat 64.236 kb on + strandat 64.236 kb on + strandat 64.257 kb on + strandat 64.277 kb on + strandat 64.277 kb on + strandat 64.277 kb on + strandat 64.278 kb on - strandat 64.290 kb on - strandat 64.295 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mandelic 5 mM
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61,916 + Atu5063 0.17 -0.2
61,916 + Atu5063 0.17 +1.6
61,922 + Atu5063 0.18 +0.4
61,930 - Atu5063 0.19 -0.6
61,961 - Atu5063 0.23 +0.6
61,999 - Atu5063 0.27 +0.2
62,057 - Atu5063 0.33 -0.2
62,093 + Atu5063 0.38 +0.2
62,093 + Atu5063 0.38 +0.0
62,093 + Atu5063 0.38 +0.7
62,093 + Atu5063 0.38 -0.1
62,093 + Atu5063 0.38 +0.5
62,101 - Atu5063 0.38 +0.6
62,126 + Atu5063 0.41 -0.1
62,126 + Atu5063 0.41 -0.2
62,136 + Atu5063 0.42 -0.8
62,172 + Atu5063 0.47 -0.3
62,225 + Atu5063 0.53 +1.1
62,391 + Atu5063 0.71 +0.2
62,459 + Atu5063 0.79 +0.1
62,493 + Atu5063 0.83 +0.8
62,511 + Atu5063 0.85 -0.3
62,546 + Atu5063 0.89 +0.1
62,625 + -0.1
62,625 + +0.5
62,663 - -0.0
62,666 - +0.1
62,699 + -0.2
62,718 - -1.2
62,733 - -0.3
62,745 + -0.0
62,754 - +0.2
62,768 + +0.0
62,776 - -0.5
62,789 + +1.1
62,789 + +0.0
62,789 + -0.4
62,826 - -0.4
62,843 + +0.5
62,848 - -0.2
62,967 + Atu5064 0.18 +0.3
62,967 + Atu5064 0.18 +0.8
63,039 - Atu5064 0.34 +0.2
63,068 - Atu5064 0.40 +0.1
63,211 - Atu5064 0.72 +0.6
63,211 - Atu5064 0.72 +1.2
63,216 - Atu5064 0.73 +0.5
63,216 - Atu5064 0.73 +0.4
63,244 - Atu5064 0.79 +0.4
63,244 - Atu5064 0.79 -0.5
63,244 - Atu5064 0.79 +0.1
63,244 - Atu5064 0.79 +0.1
63,244 - Atu5064 0.79 +0.6
63,246 + Atu5064 0.79 +0.2
63,254 - Atu5064 0.81 +0.3
63,271 - Atu5064 0.85 +0.4
63,496 - +0.2
63,516 + -0.1
63,535 - -0.4
63,636 + Atu5065 0.20 +0.1
63,655 + Atu5065 0.22 +0.3
63,663 - Atu5065 0.23 +0.6
63,663 - Atu5065 0.23 +0.2
63,706 + Atu5065 0.28 +0.2
63,714 - Atu5065 0.29 -0.1
63,867 + Atu5065 0.48 +0.1
63,904 + Atu5065 0.53 +0.1
64,019 + Atu5065 0.67 +0.9
64,019 + Atu5065 0.67 +0.3
64,024 + Atu5065 0.67 +1.0
64,027 - Atu5065 0.68 -0.0
64,027 - Atu5065 0.68 +0.1
64,027 - Atu5065 0.68 -0.8
64,088 - Atu5065 0.75 +0.0
64,111 - Atu5065 0.78 +0.2
64,111 - Atu5065 0.78 +0.1
64,127 + Atu5065 0.80 +0.1
64,175 + Atu5065 0.86 +0.0
64,180 + Atu5065 0.86 -0.9
64,193 - Atu5065 0.88 +0.0
64,236 + +0.1
64,236 + +0.2
64,236 + +0.2
64,257 + +0.9
64,277 + +1.6
64,277 + +0.2
64,277 + -0.0
64,278 - +0.4
64,290 - -0.0
64,295 - -0.3

Or see this region's nucleotide sequence