Strain Fitness in Agrobacterium fabrum C58 around Atu4748

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
1,916,794	+				+0.8
1,916,802	-				+0.3
1,916,920	+		Atu4747	0.12	+0.5
1,917,007	-		Atu4747	0.21	+0.8
1,917,057	-		Atu4747	0.26	-0.8
1,917,074	+		Atu4747	0.28	-0.3
1,917,174	-		Atu4747	0.38	+0.2
1,917,232	-		Atu4747	0.44	+0.2
1,917,275	+		Atu4747	0.48	-0.8
1,917,308	-		Atu4747	0.51	-1.0
1,917,354	-		Atu4747	0.56	+0.1
1,917,361	-		Atu4747	0.57	+0.0
1,917,428	+		Atu4747	0.63	-0.1
1,917,464	+		Atu4747	0.67	+0.0
1,917,478	+		Atu4747	0.68	+0.4
1,917,483	+		Atu4747	0.69	+1.4
1,917,486	-		Atu4747	0.69	-0.4
1,917,493	+		Atu4747	0.70	-0.4
1,917,662	-		Atu4747	0.87	+0.1
1,917,716	-				-0.4
1,917,779	+				-0.1
1,917,820	+				+0.3
1,918,002	-		Atu4748	0.24	+1.1
1,918,003	+		Atu4748	0.25	+0.0
1,918,057	+		Atu4748	0.31	+0.0
1,918,057	+		Atu4748	0.31	+0.3
1,918,057	+		Atu4748	0.31	-1.2
1,918,065	-		Atu4748	0.32	+0.0
1,918,090	+		Atu4748	0.35	+0.1
1,918,258	-		Atu4748	0.54	+0.1
1,918,306	-		Atu4748	0.60	+0.6
1,918,483	+		Atu4748	0.81	+0.4
1,918,491	-		Atu4748	0.82	+0.5
1,918,491	-		Atu4748	0.82	+0.6
1,918,572	+				-0.0
1,918,572	+				-0.5
1,918,575	-				+0.8
1,918,582	-				-0.6
1,918,596	+				-0.2
1,918,603	-				-0.8
1,918,617	+				+0.0
1,918,625	-				+0.0
1,918,837	-		Atu4749	0.23	-0.3
1,918,838	-		Atu4749	0.23	+0.0
1,918,917	+		Atu4749	0.35	-0.2
1,918,932	+		Atu4749	0.38	+1.7
1,918,939	+		Atu4749	0.39	-0.3
1,918,984	-		Atu4749	0.45	-0.2
1,919,095	+		Atu4749	0.62	-0.1
1,919,218	+		Atu4749	0.81	+0.7
1,919,285	+				+0.6
1,919,380	-				-2.1
1,919,426	+				-0.4
1,919,426	+				+1.9
1,919,434	-				-1.0
1,919,505	-		Atu4750	0.11	-0.4
1,919,518	+		Atu4750	0.12	+0.4
1,919,587	-		Atu4750	0.20	+0.3
1,919,587	-		Atu4750	0.20	+0.4