Strain Fitness in Agrobacterium fabrum C58 around Atu4557

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
1,702,041	-				-0.3
1,702,060	-		Atu4556	0.11	-2.0
1,702,067	+		Atu4556	0.12	+0.3
1,702,137	+		Atu4556	0.18	+1.1
1,702,137	+		Atu4556	0.18	+0.4
1,702,176	-		Atu4556	0.22	-0.2
1,702,217	+		Atu4556	0.26	+0.8
1,702,276	-		Atu4556	0.31	-0.4
1,702,342	-		Atu4556	0.37	+0.3
1,702,417	-		Atu4556	0.45	-0.1
1,702,599	+		Atu4556	0.62	-0.2
1,702,720	-		Atu4556	0.73	+0.4
1,702,757	-		Atu4556	0.77	-0.9
1,702,802	-		Atu4556	0.81	-0.2
1,702,807	-		Atu4556	0.81	-1.1
1,702,831	+		Atu4556	0.84	+0.1
1,702,854	-		Atu4556	0.86	-0.6
1,702,978	-				-0.2
1,702,978	-				+0.3
1,702,983	+				-0.3
1,703,018	+				-0.1
1,703,041	-				+1.4
1,703,212	+		Atu4557	0.25	-0.1
1,703,233	+		Atu4557	0.28	+1.0
1,703,233	+		Atu4557	0.28	+0.0
1,703,236	-		Atu4557	0.28	+1.3
1,703,241	-		Atu4557	0.29	-0.3
1,703,241	-		Atu4557	0.29	-0.3
1,703,362	+		Atu4557	0.44	+0.8
1,703,381	-		Atu4557	0.47	+0.1
1,703,584	+		Atu4557	0.73	+0.3
1,703,653	-		Atu4557	0.82	+0.2
1,703,672	-		Atu4557	0.84	+0.2
1,703,692	-		Atu4557	0.87	+0.1
1,703,742	-				+0.1
1,703,852	-				+0.3
1,703,889	-				+0.3
1,703,933	+				-0.9
1,703,941	-				-0.0
1,703,949	+				-0.1
1,704,065	+				+0.4
1,704,073	-				+0.6
1,704,073	-				-0.3
1,704,073	-				+0.2
1,704,073	-				-0.1
1,704,099	+				-0.0
1,704,128	-				-0.1
1,704,173	-		Atu4558	0.11	+0.0
1,704,239	-		Atu4558	0.17	-0.1
1,704,244	+		Atu4558	0.18	-0.1
1,704,244	+		Atu4558	0.18	+0.2
1,704,249	+		Atu4558	0.18	-2.8
1,704,294	-		Atu4558	0.23	-0.9
1,704,307	-		Atu4558	0.24	-0.5
1,704,312	+		Atu4558	0.25	+0.8
1,704,335	+		Atu4558	0.27	-1.1
1,704,394	-		Atu4558	0.33	+0.1
1,704,394	-		Atu4558	0.33	-0.0
1,704,550	-		Atu4558	0.48	+0.7
1,704,555	-		Atu4558	0.49	-0.0
1,704,614	+		Atu4558	0.55	+0.6
1,704,677	+		Atu4558	0.61	+0.3
1,704,687	-		Atu4558	0.62	+0.4
1,704,780	+		Atu4558	0.72	-1.3
1,704,788	-		Atu4558	0.72	-0.6