Strain Fitness in Agrobacterium fabrum C58 around Atu4410

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
1,544,295	+		Atu4408	0.78	-0.1
1,544,295	+		Atu4408	0.78	-0.2
1,544,322	-		Atu4408	0.79	+1.1
1,544,371	-		Atu4408	0.81	+1.1
1,544,394	-		Atu4408	0.82	+0.1
1,544,451	-		Atu4408	0.85	+0.2
1,544,560	-		Atu4408	0.89	+2.1
1,544,743	+				-0.2
1,544,755	+				-0.8
1,544,789	-				-0.0
1,544,817	+				+0.2
1,544,820	-				+0.7
1,544,899	+		Atu4409	0.19	-0.1
1,544,926	-		Atu4409	0.24	-0.6
1,545,008	+		Atu4409	0.41	+0.5
1,545,108	+		Atu4409	0.61	-0.0
1,545,131	+		Atu4409	0.66	+0.3
1,545,131	+		Atu4409	0.66	+0.0
1,545,562	+		Atu4410	0.38	-1.0
1,545,628	-		Atu4410	0.48	-0.3
1,545,651	-		Atu4410	0.51	-0.1
1,545,682	+		Atu4410	0.55	-1.1
1,545,690	-		Atu4410	0.56	-0.2
1,545,866	+		Atu4410	0.81	-0.3
1,545,881	+		Atu4410	0.84	-0.7
1,545,951	+				-0.1
1,545,989	+				+0.1
1,546,002	-				-0.1
1,546,146	+		Atu4411	0.12	-0.5
1,546,367	+		Atu4411	0.38	-0.6
1,546,397	-		Atu4411	0.41	-0.6
1,546,410	+		Atu4411	0.43	+0.1
1,546,480	+		Atu4411	0.51	-0.3
1,546,493	-		Atu4411	0.53	+0.4
1,546,507	+		Atu4411	0.54	-0.1
1,546,599	+		Atu4411	0.65	-0.1
1,546,816	-				-0.2
1,546,880	+				+0.2
1,546,881	-				+0.0
1,546,985	-				+0.9