Strain Fitness in Agrobacterium fabrum C58 around Atu4081

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
1,200,612	+		Atu4079	0.58	-0.9
1,200,620	-		Atu4079	0.61	+0.2
1,200,640	-		Atu4079	0.68	-0.1
1,200,653	+		Atu4079	0.72	+0.1
1,200,692	-		Atu4079	0.87	+0.3
1,200,791	+				-0.1
1,200,791	+				+0.0
1,200,858	+				-0.3
1,200,860	+				-0.5
1,200,885	+		Atu4080	0.11	-0.1
1,200,928	+		Atu4080	0.16	-0.5
1,200,944	+		Atu4080	0.18	+0.3
1,200,976	+		Atu4080	0.22	+0.7
1,201,012	-		Atu4080	0.27	-1.1
1,201,012	-		Atu4080	0.27	+0.1
1,201,030	-		Atu4080	0.29	-0.4
1,201,043	+		Atu4080	0.31	-0.3
1,201,178	-		Atu4080	0.49	+1.6
1,201,186	+		Atu4080	0.50	+0.6
1,201,252	+		Atu4080	0.58	-0.3
1,201,260	-		Atu4080	0.59	-0.1
1,201,315	+		Atu4080	0.66	+0.2
1,201,319	-		Atu4080	0.67	+0.2
1,201,323	+		Atu4080	0.67	+0.5
1,201,324	-		Atu4080	0.68	-0.1
1,201,432	+		Atu4080	0.82	+0.6
1,201,445	+		Atu4080	0.83	+0.2
1,201,482	+		Atu4080	0.88	+0.6
1,201,482	+		Atu4080	0.88	+0.3
1,201,564	-				-0.1
1,201,703	+		Atu4081	0.18	+0.4
1,201,758	-		Atu4081	0.26	-0.2
1,201,760	+		Atu4081	0.26	+0.0
1,201,792	+		Atu4081	0.31	+1.1
1,201,863	-		Atu4081	0.40	+0.1
1,201,884	+		Atu4081	0.43	+2.6
1,201,884	+		Atu4081	0.43	-0.3
1,201,884	+		Atu4081	0.43	-0.3
1,201,884	+		Atu4081	0.43	-0.2
1,201,892	+		Atu4081	0.45	+0.6
1,202,048	-		Atu4081	0.66	+1.2
1,202,053	-		Atu4081	0.67	-0.2
1,202,091	+		Atu4081	0.72	+0.3
1,202,091	+		Atu4081	0.72	+0.0
1,202,101	-		Atu4081	0.74	+1.4
1,202,123	-		Atu4081	0.77	+0.3
1,202,127	+		Atu4081	0.77	-1.4
1,202,127	+		Atu4081	0.77	+0.4
1,202,135	-		Atu4081	0.79	+0.4
1,202,194	-		Atu4081	0.87	+0.2
1,202,231	+				+0.7
1,202,525	+		Atu4082	0.15	-0.0
1,202,558	+		Atu4082	0.22	+0.4
1,202,589	+		Atu4082	0.29	+0.1
1,202,589	+		Atu4082	0.29	-0.4
1,202,597	-		Atu4082	0.31	-1.2
1,202,671	+		Atu4082	0.47	+0.5
1,202,702	-		Atu4082	0.53	-0.6
1,202,708	-		Atu4082	0.55	+0.2
1,202,823	+		Atu4082	0.80	-0.7
1,202,832	-		Atu4082	0.82	-0.1
1,202,841	+		Atu4082	0.84	+0.1
1,202,865	-		Atu4082	0.89	+0.2
1,202,905	+				+0.2
1,202,905	+				-0.1
1,202,919	-				-0.2
1,202,931	+				-1.2
1,202,939	-				+0.4
1,202,939	-				+0.2
1,202,954	-				-0.6
1,202,964	+				+0.1
1,203,051	+		Atu4083	0.12	-0.1
1,203,111	-		Atu4083	0.18	+0.4
1,203,128	-		Atu4083	0.20	-0.7
1,203,196	+		Atu4083	0.27	-1.9
1,203,227	+		Atu4083	0.30	+0.4
1,203,229	+		Atu4083	0.30	-0.1