Experiment: Mandelic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3730 and Atu3731 are separated by 99 nucleotides Atu3731 and Atu3732 overlap by 1 nucleotides Atu3732 and Atu3733 are separated by 2 nucleotides Atu3733 and Atu8191 are separated by 236 nucleotides Atu8191 and Atu8192 are separated by 11 nucleotides
Atu3730: Atu3730 - hypothetical protein, at 810,848 to 811,672
Atu3730
Atu3731: Atu3731 - 5-formyltetrahydrofolate cyclo-ligase, at 811,772 to 812,359
Atu3731
Atu3732: Atu3732 - hemolysin, at 812,359 to 813,636
Atu3732
Atu3733: Atu3733 - hypothetical protein, at 813,639 to 813,851
Atu3733
Atu8191: Atu8191 - hypothetical protein, at 814,088 to 814,465
Atu8191
Atu8192: Atu8192 - hypothetical protein, at 814,477 to 814,749
Atu8192
Position (kb) 812
813
814 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 811.457 kb on - strand, within Atu3730 at 811.871 kb on + strand, within Atu3731 at 811.886 kb on + strand, within Atu3731 at 811.886 kb on + strand, within Atu3731 at 811.891 kb on + strand, within Atu3731 at 811.899 kb on - strand, within Atu3731 at 812.058 kb on + strand, within Atu3731 at 812.151 kb on + strand, within Atu3731 at 812.224 kb on + strand, within Atu3731 at 812.232 kb on - strand, within Atu3731 at 812.255 kb on - strand, within Atu3731 at 812.268 kb on + strand, within Atu3731 at 812.360 kb on - strand at 812.364 kb on - strand at 812.364 kb on - strand at 812.454 kb on + strand at 812.454 kb on + strand at 812.506 kb on - strand, within Atu3732 at 812.706 kb on - strand, within Atu3732 at 812.724 kb on - strand, within Atu3732 at 812.740 kb on + strand, within Atu3732 at 812.769 kb on - strand, within Atu3732 at 812.769 kb on - strand, within Atu3732 at 812.837 kb on - strand, within Atu3732 at 812.947 kb on + strand, within Atu3732 at 812.955 kb on - strand, within Atu3732 at 812.956 kb on + strand, within Atu3732 at 813.058 kb on - strand, within Atu3732 at 813.060 kb on + strand, within Atu3732 at 813.060 kb on + strand, within Atu3732 at 813.064 kb on + strand, within Atu3732 at 813.079 kb on + strand, within Atu3732 at 813.079 kb on + strand, within Atu3732 at 813.079 kb on + strand, within Atu3732 at 813.087 kb on - strand, within Atu3732 at 813.087 kb on - strand, within Atu3732 at 813.087 kb on - strand, within Atu3732 at 813.087 kb on - strand, within Atu3732 at 813.116 kb on + strand, within Atu3732 at 813.116 kb on + strand, within Atu3732 at 813.124 kb on - strand, within Atu3732 at 813.124 kb on - strand, within Atu3732 at 813.124 kb on - strand, within Atu3732 at 813.124 kb on - strand, within Atu3732 at 813.124 kb on - strand, within Atu3732 at 813.222 kb on + strand, within Atu3732 at 813.367 kb on + strand, within Atu3732 at 813.436 kb on - strand, within Atu3732 at 813.512 kb on + strand at 813.542 kb on - strand at 813.590 kb on + strand at 813.598 kb on - strand at 813.607 kb on - strand at 813.654 kb on + strand at 813.662 kb on - strand, within Atu3733 at 813.780 kb on - strand, within Atu3733 at 813.840 kb on - strand at 813.920 kb on + strand at 813.972 kb on - strand at 814.026 kb on + strand at 814.037 kb on + strand at 814.134 kb on - strand, within Atu8191 at 814.425 kb on + strand, within Atu8191 at 814.483 kb on + strand at 814.586 kb on - strand, within Atu8192
Per-strain Table
Position Strand Gene LocusTag Fraction Mandelic 5 mM remove 811,457 - Atu3730 0.74 -1.2 811,871 + Atu3731 0.17 -0.4 811,886 + Atu3731 0.19 -0.0 811,886 + Atu3731 0.19 -0.0 811,891 + Atu3731 0.20 -0.2 811,899 - Atu3731 0.22 -0.3 812,058 + Atu3731 0.49 -0.1 812,151 + Atu3731 0.64 +0.6 812,224 + Atu3731 0.77 -0.3 812,232 - Atu3731 0.78 +0.2 812,255 - Atu3731 0.82 -0.3 812,268 + Atu3731 0.84 -1.3 812,360 - -0.1 812,364 - -0.0 812,364 - -0.8 812,454 + +0.1 812,454 + +0.4 812,506 - Atu3732 0.12 -0.3 812,706 - Atu3732 0.27 +1.0 812,724 - Atu3732 0.29 -0.2 812,740 + Atu3732 0.30 +0.4 812,769 - Atu3732 0.32 +0.2 812,769 - Atu3732 0.32 +0.4 812,837 - Atu3732 0.37 +0.1 812,947 + Atu3732 0.46 +0.2 812,955 - Atu3732 0.47 +0.2 812,956 + Atu3732 0.47 +0.5 813,058 - Atu3732 0.55 +3.2 813,060 + Atu3732 0.55 -0.1 813,060 + Atu3732 0.55 -0.1 813,064 + Atu3732 0.55 -0.2 813,079 + Atu3732 0.56 +1.4 813,079 + Atu3732 0.56 +0.1 813,079 + Atu3732 0.56 -1.8 813,087 - Atu3732 0.57 +0.7 813,087 - Atu3732 0.57 -0.3 813,087 - Atu3732 0.57 +0.4 813,087 - Atu3732 0.57 +1.1 813,116 + Atu3732 0.59 +0.7 813,116 + Atu3732 0.59 +0.3 813,124 - Atu3732 0.60 -0.4 813,124 - Atu3732 0.60 +0.1 813,124 - Atu3732 0.60 +0.4 813,124 - Atu3732 0.60 +1.3 813,124 - Atu3732 0.60 -0.1 813,222 + Atu3732 0.68 +1.3 813,367 + Atu3732 0.79 +0.0 813,436 - Atu3732 0.84 +0.3 813,512 + +0.4 813,542 - +0.8 813,590 + -0.3 813,598 - +0.6 813,607 - -0.0 813,654 + +0.2 813,662 - Atu3733 0.11 +0.2 813,780 - Atu3733 0.66 +0.0 813,840 - -0.3 813,920 + +0.1 813,972 - -0.2 814,026 + -0.8 814,037 + +0.4 814,134 - Atu8191 0.12 -0.0 814,425 + Atu8191 0.89 -0.0 814,483 + -2.2 814,586 - Atu8192 0.40 -1.3
Or see this region's nucleotide sequence