Experiment: Mandelic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3421 and Atu3423 are separated by 302 nucleotides Atu3423 and Atu3424 are separated by 27 nucleotides
Atu3421: Atu3421 - hypothetical protein, at 469,324 to 470,325
Atu3421
Atu3423: Atu3423 - hypothetical protein, at 470,628 to 471,077
Atu3423
Atu3424: Atu3424 - hypothetical protein, at 471,105 to 472,049
Atu3424
Position (kb) 470
471
472 Strain fitness (log2 ratio) -1
0
1
2 at 469.782 kb on + strand, within Atu3421 at 469.870 kb on + strand, within Atu3421 at 470.076 kb on - strand, within Atu3421 at 470.109 kb on - strand, within Atu3421 at 470.126 kb on + strand, within Atu3421 at 470.303 kb on - strand at 470.448 kb on + strand at 470.448 kb on + strand at 470.612 kb on + strand at 470.965 kb on - strand, within Atu3423 at 471.013 kb on - strand, within Atu3423 at 471.038 kb on + strand at 471.051 kb on - strand at 471.056 kb on - strand at 471.177 kb on - strand at 471.254 kb on - strand, within Atu3424 at 471.254 kb on - strand, within Atu3424 at 471.285 kb on - strand, within Atu3424 at 471.289 kb on + strand, within Atu3424 at 471.358 kb on - strand, within Atu3424 at 471.470 kb on - strand, within Atu3424 at 471.550 kb on - strand, within Atu3424 at 471.623 kb on + strand, within Atu3424 at 471.626 kb on - strand, within Atu3424 at 471.631 kb on - strand, within Atu3424 at 471.631 kb on - strand, within Atu3424 at 471.701 kb on + strand, within Atu3424 at 471.721 kb on + strand, within Atu3424 at 471.726 kb on + strand, within Atu3424 at 471.729 kb on - strand, within Atu3424 at 471.815 kb on - strand, within Atu3424 at 471.842 kb on + strand, within Atu3424 at 471.864 kb on + strand, within Atu3424 at 471.867 kb on - strand, within Atu3424
Per-strain Table
Position Strand Gene LocusTag Fraction Mandelic 5 mM remove 469,782 + Atu3421 0.46 +0.1 469,870 + Atu3421 0.54 -0.6 470,076 - Atu3421 0.75 +0.1 470,109 - Atu3421 0.78 -0.0 470,126 + Atu3421 0.80 +1.5 470,303 - +0.1 470,448 + +0.2 470,448 + +0.1 470,612 + +0.1 470,965 - Atu3423 0.75 +2.3 471,013 - Atu3423 0.86 +0.3 471,038 + +0.1 471,051 - -0.8 471,056 - +0.2 471,177 - -0.1 471,254 - Atu3424 0.16 -0.5 471,254 - Atu3424 0.16 -0.3 471,285 - Atu3424 0.19 -0.9 471,289 + Atu3424 0.19 -1.0 471,358 - Atu3424 0.27 -0.2 471,470 - Atu3424 0.39 -1.3 471,550 - Atu3424 0.47 -0.1 471,623 + Atu3424 0.55 +0.6 471,626 - Atu3424 0.55 +0.2 471,631 - Atu3424 0.56 +0.2 471,631 - Atu3424 0.56 -0.3 471,701 + Atu3424 0.63 -0.1 471,721 + Atu3424 0.65 -0.3 471,726 + Atu3424 0.66 -0.2 471,729 - Atu3424 0.66 +0.1 471,815 - Atu3424 0.75 +0.1 471,842 + Atu3424 0.78 +0.4 471,864 + Atu3424 0.80 -0.2 471,867 - Atu3424 0.81 +0.6
Or see this region's nucleotide sequence