Experiment: Mandelic 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3170 and Atu3171 are separated by 10 nucleotides Atu3171 and Atu3172 are separated by 4 nucleotides Atu3172 and Atu3173 are separated by 3 nucleotides
Atu3170: Atu3170 - sorbitol/mannitol ABC transporter ATPase, at 179,946 to 180,944
Atu3170
Atu3171: Atu3171 - sugar ABC transporter ATPase, at 180,955 to 182,031
Atu3171
Atu3172: Atu3172 - sugar ABC transporter permease, at 182,036 to 182,866
Atu3172
Atu3173: Atu3173 - sugar ABC transporter permease, at 182,870 to 183,754
Atu3173
Position (kb) 180
181
182
183 Strain fitness (log2 ratio) -2
-1
0
1 at 179.979 kb on - strand at 180.205 kb on + strand, within Atu3170 at 180.253 kb on - strand, within Atu3170 at 180.260 kb on + strand, within Atu3170 at 180.292 kb on - strand, within Atu3170 at 180.363 kb on - strand, within Atu3170 at 180.399 kb on + strand, within Atu3170 at 180.407 kb on - strand, within Atu3170 at 180.428 kb on + strand, within Atu3170 at 180.457 kb on - strand, within Atu3170 at 180.488 kb on - strand, within Atu3170 at 180.527 kb on + strand, within Atu3170 at 180.527 kb on + strand, within Atu3170 at 180.535 kb on - strand, within Atu3170 at 180.535 kb on - strand, within Atu3170 at 180.663 kb on + strand, within Atu3170 at 180.767 kb on + strand, within Atu3170 at 180.807 kb on - strand, within Atu3170 at 180.884 kb on + strand at 180.900 kb on - strand at 180.953 kb on + strand at 180.961 kb on - strand at 181.083 kb on - strand, within Atu3171 at 181.107 kb on + strand, within Atu3171 at 181.179 kb on + strand, within Atu3171 at 181.222 kb on + strand, within Atu3171 at 181.392 kb on + strand, within Atu3171 at 181.398 kb on - strand, within Atu3171 at 181.450 kb on - strand, within Atu3171 at 181.452 kb on + strand, within Atu3171 at 181.458 kb on + strand, within Atu3171 at 181.543 kb on - strand, within Atu3171 at 181.667 kb on - strand, within Atu3171 at 181.742 kb on - strand, within Atu3171 at 181.769 kb on + strand, within Atu3171 at 181.820 kb on - strand, within Atu3171 at 181.972 kb on + strand at 181.989 kb on + strand at 182.033 kb on + strand at 182.033 kb on + strand at 182.073 kb on + strand at 182.133 kb on + strand, within Atu3172 at 182.360 kb on + strand, within Atu3172 at 182.367 kb on - strand, within Atu3172 at 182.367 kb on - strand, within Atu3172 at 182.420 kb on + strand, within Atu3172 at 182.428 kb on - strand, within Atu3172 at 182.438 kb on - strand, within Atu3172 at 182.438 kb on - strand, within Atu3172 at 182.563 kb on - strand, within Atu3172 at 182.586 kb on + strand, within Atu3172 at 182.623 kb on + strand, within Atu3172 at 182.722 kb on + strand, within Atu3172 at 182.742 kb on + strand, within Atu3172 at 182.790 kb on + strand at 182.862 kb on + strand at 182.868 kb on + strand at 182.868 kb on + strand at 182.911 kb on + strand at 182.919 kb on - strand at 182.924 kb on - strand at 182.924 kb on - strand at 182.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mandelic 5 mM remove 179,979 - -0.4 180,205 + Atu3170 0.26 +0.4 180,253 - Atu3170 0.31 +0.2 180,260 + Atu3170 0.31 +0.6 180,292 - Atu3170 0.35 +0.6 180,363 - Atu3170 0.42 +0.3 180,399 + Atu3170 0.45 -0.2 180,407 - Atu3170 0.46 -2.6 180,428 + Atu3170 0.48 -0.3 180,457 - Atu3170 0.51 +0.3 180,488 - Atu3170 0.54 +0.3 180,527 + Atu3170 0.58 -0.6 180,527 + Atu3170 0.58 +0.0 180,535 - Atu3170 0.59 +0.7 180,535 - Atu3170 0.59 +0.4 180,663 + Atu3170 0.72 -0.3 180,767 + Atu3170 0.82 +0.8 180,807 - Atu3170 0.86 -0.0 180,884 + -2.5 180,900 - +0.3 180,953 + -0.1 180,961 - -0.5 181,083 - Atu3171 0.12 +0.8 181,107 + Atu3171 0.14 -0.4 181,179 + Atu3171 0.21 +0.1 181,222 + Atu3171 0.25 +0.0 181,392 + Atu3171 0.41 +0.5 181,398 - Atu3171 0.41 -0.1 181,450 - Atu3171 0.46 -1.6 181,452 + Atu3171 0.46 +0.3 181,458 + Atu3171 0.47 +0.8 181,543 - Atu3171 0.55 -0.0 181,667 - Atu3171 0.66 +0.5 181,742 - Atu3171 0.73 +0.7 181,769 + Atu3171 0.76 +0.3 181,820 - Atu3171 0.80 -0.0 181,972 + +0.1 181,989 + -0.2 182,033 + -0.8 182,033 + +0.2 182,073 + -0.3 182,133 + Atu3172 0.12 -0.4 182,360 + Atu3172 0.39 +0.7 182,367 - Atu3172 0.40 +0.1 182,367 - Atu3172 0.40 +0.3 182,420 + Atu3172 0.46 +0.3 182,428 - Atu3172 0.47 +0.2 182,438 - Atu3172 0.48 +0.2 182,438 - Atu3172 0.48 +0.1 182,563 - Atu3172 0.63 +0.4 182,586 + Atu3172 0.66 +0.0 182,623 + Atu3172 0.71 -0.6 182,722 + Atu3172 0.83 -0.4 182,742 + Atu3172 0.85 +1.2 182,790 + -0.2 182,862 + +0.2 182,868 + -0.0 182,868 + -0.3 182,911 + -0.3 182,919 - +0.8 182,924 - +0.0 182,924 - -0.1 182,924 - -0.5
Or see this region's nucleotide sequence