Strain Fitness in Agrobacterium fabrum C58 around Atu3113

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
121,721	+				-0.7
121,723	+				-0.8
121,762	-				+0.2
121,762	-				+0.1
121,793	-				+0.1
121,986	+		Atu3112	0.18	+0.4
121,992	-		Atu3112	0.18	+0.1
121,994	+		Atu3112	0.19	+0.2
121,994	+		Atu3112	0.19	-0.1
122,002	-		Atu3112	0.20	+0.2
122,002	-		Atu3112	0.20	+0.0
122,008	-		Atu3112	0.20	+0.4
122,020	+		Atu3112	0.22	-0.1
122,048	+		Atu3112	0.25	+0.0
122,140	+		Atu3112	0.35	-0.0
122,157	+		Atu3112	0.37	-0.1
122,161	-		Atu3112	0.38	+0.3
122,203	+		Atu3112	0.42	+0.6
122,230	+		Atu3112	0.46	+0.1
122,391	-		Atu3112	0.64	+0.2
122,412	-		Atu3112	0.66	-2.3
122,412	-		Atu3112	0.66	+0.3
122,491	+		Atu3112	0.75	+0.4
122,493	-		Atu3112	0.76	+0.1
122,562	+		Atu3112	0.83	+0.1
122,589	+		Atu3112	0.87	-0.0
122,602	-		Atu3112	0.88	+1.1
122,620	+				+0.1
122,620	+				+0.3
122,620	+				+0.2
122,628	-				+0.2
122,630	+				-0.4
122,630	+				+1.2
122,746	-				-0.0
122,753	-				+0.0
122,785	+				+0.0
122,813	+		Atu3113	0.13	+0.1
122,839	-		Atu3113	0.16	-1.3
122,841	+		Atu3113	0.16	-0.3
122,841	+		Atu3113	0.16	+0.0
122,841	+		Atu3113	0.16	+0.4
122,841	+		Atu3113	0.16	-1.4
122,841	+		Atu3113	0.16	-0.2
122,841	+		Atu3113	0.16	+0.1
122,841	+		Atu3113	0.16	+0.2
122,841	-		Atu3113	0.16	+0.2
122,849	-		Atu3113	0.17	-0.3
122,849	-		Atu3113	0.17	-0.3
122,849	-		Atu3113	0.17	+0.1
122,849	-		Atu3113	0.17	+0.2
122,849	-		Atu3113	0.17	+1.2
122,849	-		Atu3113	0.17	+1.2
122,907	+		Atu3113	0.23	+0.1
122,930	-		Atu3113	0.26	+2.8
122,966	+		Atu3113	0.30	+1.0
122,971	+		Atu3113	0.31	+0.3
122,984	-		Atu3113	0.32	+2.8
123,002	-		Atu3113	0.34	-0.2
123,033	-		Atu3113	0.38	-1.1
123,235	+		Atu3113	0.60	+0.1
123,243	-		Atu3113	0.61	-0.1
123,280	+		Atu3113	0.65	+1.2
123,288	-		Atu3113	0.66	+0.6
123,288	-		Atu3113	0.66	-0.2
123,340	-		Atu3113	0.72	+0.3
123,441	-		Atu3113	0.84	-0.1
123,441	-		Atu3113	0.84	-1.6
123,511	-				-1.0
123,993	+		Atu3114	0.26	-0.8
124,026	-		Atu3114	0.28	-0.1
124,026	-		Atu3114	0.28	+0.0
124,086	+		Atu3114	0.33	+0.0
124,140	-		Atu3114	0.37	+0.3
124,179	+		Atu3114	0.40	+1.2
124,245	-		Atu3114	0.45	+0.4
124,251	+		Atu3114	0.46	+0.2
124,264	-		Atu3114	0.47	-0.4
124,284	-		Atu3114	0.48	-0.1
124,284	-		Atu3114	0.48	-0.0
124,343	+		Atu3114	0.53	-0.2
124,348	+		Atu3114	0.53	-1.0
124,457	-		Atu3114	0.62	-0.3
124,501	-		Atu3114	0.65	+0.0
124,538	-		Atu3114	0.68	+1.0
124,550	-		Atu3114	0.69	-0.1