Strain Fitness in Agrobacterium fabrum C58 around Atu2800

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
2,800,514	+		Atu2798	0.83	-0.4
2,800,527	-		Atu2798	0.84	+0.1
2,800,643	+				-1.7
2,800,693	-				-0.1
2,800,729	+				+0.7
2,800,736	-				-0.2
2,800,821	-		Atu2799	0.13	-0.9
2,800,847	-		Atu2799	0.16	-0.4
2,800,892	-		Atu2799	0.22	-1.9
2,800,948	-		Atu2799	0.29	-1.7
2,801,057	-		Atu2799	0.43	+0.3
2,801,078	-		Atu2799	0.46	+0.2
2,801,103	-		Atu2799	0.49	-0.3
2,801,230	+		Atu2799	0.65	-0.3
2,801,367	+		Atu2799	0.83	-0.3
2,801,445	+				-0.4
2,801,735	+		Atu2800	0.35	-1.0
2,801,931	-		Atu2800	0.60	-0.5
2,802,095	+		Atu2800	0.82	+0.1
2,802,235	-				-0.2
2,802,504	+		Atu2801	0.36	-0.5
2,802,642	-		Atu2801	0.54	+0.7
2,802,697	+		Atu2801	0.61	-0.6
2,802,705	-		Atu2801	0.62	+0.3
2,802,724	-		Atu2801	0.65	+0.0
2,802,789	-		Atu2801	0.73	-1.4
2,802,794	-		Atu2801	0.74	-0.4
2,802,816	+		Atu2801	0.77	-0.7
2,802,931	-				-1.1
2,802,933	+				-0.0
2,802,938	+				-0.6
2,802,941	-				-0.0
2,802,941	-				-0.6
2,802,958	+				-0.9
2,802,996	-				-0.1
2,803,046	+				+0.2
2,803,054	-				-1.1
2,803,076	-		Atu2802	0.13	-0.2
2,803,087	+		Atu2802	0.15	-0.7
2,803,089	+		Atu2802	0.15	+0.4
2,803,225	-		Atu2802	0.37	-0.2