Strain Fitness in Agrobacterium fabrum C58 around Atu2457

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
2,426,872	-		Atu2455	0.64	-0.5
2,426,873	-		Atu2455	0.64	+0.0
2,426,899	-		Atu2455	0.68	+0.2
2,426,970	-		Atu2455	0.78	-0.2
2,426,985	-		Atu2455	0.80	+0.2
2,427,039	+		Atu2455	0.88	-0.3
2,427,242	+		Atu2456	0.24	-0.2
2,427,261	+		Atu2456	0.29	+0.1
2,427,269	-		Atu2456	0.31	+0.7
2,427,335	-		Atu2456	0.48	-0.5
2,427,412	-		Atu2456	0.67	+0.4
2,427,412	-		Atu2456	0.67	-0.2
2,427,529	-				-0.4
2,427,536	+				+1.0
2,427,573	+				-0.4
2,427,578	+				-1.0
2,427,600	+				-1.2
2,427,601	-				-0.6
2,427,601	-				-0.2
2,427,615	-				-1.0
2,427,615	-				-0.0
2,427,652	+				-0.2
2,427,751	+				+0.0
2,427,751	+				+0.1
2,427,751	+				-0.4
2,427,759	-				+0.9
2,427,806	-				-0.4
2,427,818	-				+0.0
2,427,939	+		Atu2457	0.41	+0.1
2,427,952	-		Atu2457	0.45	-0.1
2,427,952	-		Atu2457	0.45	+0.7
2,428,004	+		Atu2457	0.60	+0.3
2,428,019	+		Atu2457	0.64	+0.7
2,428,118	-				-0.1
2,428,162	-				+0.1
2,428,184	-				-0.6
2,428,293	+				+0.3
2,428,346	-		Atu2458	0.16	+0.0
2,428,346	-		Atu2458	0.16	+0.1
2,428,434	-		Atu2458	0.27	-0.6
2,428,589	+		Atu2458	0.47	-0.9
2,428,609	+		Atu2458	0.50	+0.2
2,428,672	+		Atu2458	0.58	-0.9
2,428,672	+		Atu2458	0.58	-0.2
2,428,686	+		Atu2458	0.60	+0.0
2,428,691	+		Atu2458	0.60	-0.0
2,428,709	-		Atu2458	0.62	-0.0
2,428,866	+		Atu2458	0.83	+0.6
2,428,866	+		Atu2458	0.83	-0.2
2,428,874	-		Atu2458	0.84	-0.0
2,428,965	-				+0.3
2,428,973	+				+0.2
2,429,118	+		Atu2459	0.11	+1.0