Strain Fitness in Agrobacterium fabrum C58 around Atu2123

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
2,086,449	-		Atu2122	0.60	-0.2
2,086,560	-		Atu2122	0.69	-0.5
2,086,560	-		Atu2122	0.69	-0.3
2,086,607	-		Atu2122	0.73	+1.0
2,086,679	+		Atu2122	0.78	+0.8
2,086,680	-		Atu2122	0.78	-0.7
2,086,744	-		Atu2122	0.84	-0.5
2,086,753	+		Atu2122	0.84	-0.0
2,086,869	+				-0.2
2,087,146	-				-0.1
2,087,329	-				+0.7
2,087,484	+				+1.1
2,087,484	+				-0.4
2,087,491	+				+0.5
2,087,492	-				-0.2
2,087,500	+		Atu2123	0.10	-0.6
2,087,906	-		Atu2123	0.56	+0.1
2,087,906	-		Atu2123	0.56	-0.3
2,087,906	-		Atu2123	0.56	-0.1
2,087,939	+		Atu2123	0.60	-0.5
2,087,986	-		Atu2123	0.65	+0.5
2,088,070	-		Atu2123	0.74	-1.0
2,088,212	-				-0.1
2,088,293	+				+0.6
2,088,310	-				-0.0
2,088,319	-				+0.8
2,088,329	-				-0.2
2,088,388	-				+0.6
2,088,401	-				-0.5
2,088,434	-		Atu2124	0.13	-0.5
2,088,434	-		Atu2124	0.13	-1.2
2,088,603	-		Atu2124	0.30	-0.1
2,088,603	-		Atu2124	0.30	-0.7
2,088,740	-		Atu2124	0.43	-0.3
2,088,922	-		Atu2124	0.61	-1.2
2,089,007	-		Atu2124	0.69	+0.1
2,089,026	-		Atu2124	0.71	-0.2