Strain Fitness in Agrobacterium fabrum C58 around Atu2028

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
1,988,142	-		Atu2026	0.71	-0.2
1,988,286	-		Atu2026	0.84	-0.1
1,988,313	+		Atu2026	0.86	-0.1
1,988,429	+				+0.7
1,988,633	+		Atu8169	0.17	+0.5
1,988,641	-		Atu8169	0.19	-0.4
1,988,654	-		Atu8169	0.21	-0.2
1,988,661	-		Atu8169	0.23	-0.4
1,988,666	+		Atu8169	0.24	-0.4
1,988,674	-		Atu8169	0.25	-0.3
1,988,768	+		Atu8169	0.45	+2.2
1,988,815	+		Atu8169	0.55	+0.0
1,988,902	-		Atu8169	0.73	-0.1
1,988,924	-		Atu8169	0.77	-0.1
1,988,931	-		Atu8169	0.79	-0.0
1,988,946	-		Atu8169	0.82	+0.5
1,989,047	-				-0.5
1,989,190	-		Atu2028	0.43	+0.3
1,989,214	-		Atu2028	0.49	+1.0
1,989,249	+		Atu2028	0.58	+0.3
1,989,249	+		Atu2028	0.58	-0.3
1,989,479	+				-0.1
1,989,580	+		Atu2029	0.15	-0.1
1,989,588	-		Atu2029	0.17	-0.4
1,989,623	+		Atu2029	0.26	+0.3
1,989,745	+		Atu2029	0.58	-0.1
1,989,879	+				+0.3
1,989,879	+				-0.1
1,989,887	-				+0.2
1,989,887	-				-0.2
1,989,887	-				-0.1
1,989,887	-				-0.3
1,990,006	+		Atu2030	0.18	+0.6
1,990,014	-		Atu2030	0.20	-0.7
1,990,018	-		Atu2030	0.20	+0.2
1,990,049	-		Atu2030	0.26	-0.3
1,990,188	+		Atu2030	0.52	-0.0
1,990,188	+		Atu2030	0.52	-0.1
1,990,196	-		Atu2030	0.53	+0.4
1,990,252	+		Atu2030	0.64	-0.1
1,990,292	-		Atu2030	0.71	+0.2
1,990,302	+		Atu2030	0.73	-0.4
1,990,310	-		Atu2030	0.75	-1.5
1,990,316	-		Atu2030	0.76	-2.0
1,990,323	-		Atu2030	0.77	+0.5