Strain Fitness in Agrobacterium fabrum C58 around Atu1678

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
1,664,677	+		Atu1677	0.12	-0.2
1,664,981	-		Atu1677	0.39	-0.5
1,665,043	-		Atu1677	0.44	-0.2
1,665,170	-		Atu1677	0.55	-0.6
1,665,259	+		Atu1677	0.63	-0.5
1,665,483	+		Atu1677	0.83	+0.3
1,665,531	+		Atu1677	0.87	-2.2
1,665,599	-				+0.7
1,665,707	-				-0.6
1,665,897	-		Atu1678	0.20	+0.3
1,665,947	-		Atu1678	0.25	-1.6
1,666,018	-		Atu1678	0.31	+0.0
1,666,037	+		Atu1678	0.33	-1.4
1,666,094	+		Atu1678	0.38	+0.8
1,666,156	-		Atu1678	0.44	+0.2
1,666,194	+		Atu1678	0.47	-0.8
1,666,313	-		Atu1678	0.58	+0.8
1,666,385	+		Atu1678	0.64	-0.3
1,666,393	-		Atu1678	0.65	-0.5
1,666,393	-		Atu1678	0.65	-0.9
1,666,505	-		Atu1678	0.75	-1.2
1,666,567	+		Atu1678	0.81	-0.4
1,666,756	-				-0.2
1,666,771	-				-0.0
1,666,783	-				+0.5
1,666,815	+				-0.3
1,666,833	-				+1.1
1,666,874	-				+0.1
1,666,884	+				+0.7
1,666,908	-				-0.3
1,666,910	+				-0.0
1,666,923	+				+0.3
1,666,923	+				-0.0
1,666,970	+				+0.3
1,667,017	-				+0.1
1,667,068	-				-1.5
1,667,135	-		Atu1679	0.22	-2.0
1,667,206	-		Atu1679	0.35	-0.2
1,667,331	-		Atu1679	0.60	-1.1
1,667,359	+		Atu1679	0.65	-0.2
1,667,542	-				-0.2
1,667,566	-				-0.1
1,667,566	-				+0.5
1,667,566	-				-0.1
1,667,568	+				-0.6
1,667,568	+				+1.2
1,667,649	-		Atu1680	0.14	-0.7
1,667,694	+		Atu1680	0.22	-0.4