Strain Fitness in Agrobacterium fabrum C58 around Atu1677

Experiment: Mandelic 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mandelic 5 mM
1,663,748	+		Atu1676	0.38	-0.5
1,663,748	+		Atu1676	0.38	-0.1
1,663,770	+		Atu1676	0.41	-0.4
1,664,206	+		Atu1676	0.83	-0.2
1,664,214	-		Atu1676	0.83	-0.0
1,664,306	-				+0.5
1,664,453	-				+0.7
1,664,459	-				+0.3
1,664,548	+				-0.7
1,664,553	+				+0.1
1,664,553	+				+0.9
1,664,558	+				+0.7
1,664,561	-				-0.1
1,664,636	+				-0.7
1,664,677	+		Atu1677	0.12	-0.2
1,664,981	-		Atu1677	0.39	-0.5
1,665,043	-		Atu1677	0.44	-0.2
1,665,170	-		Atu1677	0.55	-0.6
1,665,259	+		Atu1677	0.63	-0.5
1,665,483	+		Atu1677	0.83	+0.3
1,665,531	+		Atu1677	0.87	-2.2
1,665,599	-				+0.7
1,665,707	-				-0.6
1,665,897	-		Atu1678	0.20	+0.3
1,665,947	-		Atu1678	0.25	-1.6
1,666,018	-		Atu1678	0.31	+0.0
1,666,037	+		Atu1678	0.33	-1.4
1,666,094	+		Atu1678	0.38	+0.8
1,666,156	-		Atu1678	0.44	+0.2
1,666,194	+		Atu1678	0.47	-0.8
1,666,313	-		Atu1678	0.58	+0.8
1,666,385	+		Atu1678	0.64	-0.3
1,666,393	-		Atu1678	0.65	-0.5
1,666,393	-		Atu1678	0.65	-0.9
1,666,505	-		Atu1678	0.75	-1.2
1,666,567	+		Atu1678	0.81	-0.4